Agent-Skills.md

Agent Skills: AlphaFold Predictor Skill

AlphaFold protein structure prediction skill with confidence assessment and model analysis

bioinformaticsID: a5c-ai/babysitter/alphafold-predictor

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/library/specializations/domains/science/bioinformatics/skills/alphafold-predictor

Skill Files

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library/specializations/domains/science/bioinformatics/skills/alphafold-predictor/SKILL.md

Skill Metadata

Name
alphafold-predictor
Description
AlphaFold protein structure prediction skill with confidence assessment and model analysis

AlphaFold Predictor Skill

Purpose

Enable AlphaFold protein structure prediction with confidence assessment and model analysis.

Capabilities

  • Structure prediction execution
  • pLDDT confidence scoring
  • PAE analysis
  • Multi-chain complex prediction
  • Template-based refinement
  • ColabFold integration

Usage Guidelines

  • Review pLDDT scores for prediction confidence
  • Analyze PAE for domain boundaries
  • Predict complexes for multi-protein assemblies
  • Use templates when homologs exist
  • Validate predictions against experimental data
  • Document model versions and parameters

Dependencies

  • AlphaFold2
  • ColabFold
  • RoseTTAFold

Process Integration

  • Protein Structure Prediction (protein-structure-prediction)
  • Molecular Docking and Virtual Screening (molecular-docking)