Agent Skills: Bioreactor Protocol Generator Skill

Bioreactor culture protocol development skill for tissue construct maturation

Tissue EngineeringID: a5c-ai/babysitter/bioreactor-protocol-generator

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plugins/babysitter/skills/babysit/process/specializations/domains/science/biomedical-engineering/skills/bioreactor-protocol-generator/SKILL.md

Skill Metadata

Name
bioreactor-protocol-generator
Description
Bioreactor culture protocol development skill for tissue construct maturation

Bioreactor Protocol Generator Skill

Purpose

The Bioreactor Protocol Generator Skill develops culture protocols for tissue construct maturation in bioreactor systems, optimizing mechanical conditioning and perfusion parameters.

Capabilities

  • Bioreactor type selection guidance
  • Mechanical conditioning protocol design
  • Perfusion flow rate optimization
  • Gas exchange parameter calculation
  • Culture duration recommendations
  • Monitoring parameter identification
  • Aseptic technique checklists
  • Media formulation guidance
  • Stimulation regime design
  • Scale-up considerations
  • Quality control protocols

Usage Guidelines

When to Use

  • Developing bioreactor culture protocols
  • Optimizing tissue maturation
  • Scaling up tissue production
  • Establishing quality controls

Prerequisites

  • Scaffold design finalized
  • Cell source identified
  • Bioreactor system selected
  • Target tissue properties defined

Best Practices

  • Start with literature-based parameters
  • Monitor key indicators continuously
  • Implement aseptic protocols rigorously
  • Document all parameter changes

Process Integration

This skill integrates with the following processes:

  • Cell Culture and Tissue Construct Development
  • Scaffold Fabrication and Characterization
  • Design Control Process Implementation
  • Verification and Validation Test Planning

Dependencies

  • Bioreactor specifications
  • Culture optimization literature
  • Media suppliers
  • Monitoring equipment
  • Aseptic processing guidelines

Configuration

bioreactor-protocol-generator:
  bioreactor-types:
    - spinner-flask
    - rotating-wall
    - perfusion
    - compression
    - tensile
  stimulation-modes:
    - mechanical
    - electrical
    - magnetic
    - combined
  monitoring-parameters:
    - pH
    - dissolved-oxygen
    - glucose
    - lactate

Output Artifacts

  • Bioreactor selection rationale
  • Culture protocols
  • Stimulation parameters
  • Media specifications
  • Monitoring schedules
  • Aseptic procedures
  • Quality control criteria
  • Scale-up plans

Quality Criteria

  • Protocol achieves target tissue properties
  • Parameters within equipment capabilities
  • Monitoring adequate for process control
  • Aseptic technique ensures sterility
  • Documentation supports reproducibility
  • Scale-up considerations addressed