Agent-Skills.md

Agent Skills: Fusion Gene Detector Skill

Gene fusion detection skill for oncology applications with multiple caller integration

bioinformaticsID: a5c-ai/babysitter/fusion-gene-detector

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

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pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/fusion-gene-detector

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plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/fusion-gene-detector/SKILL.md

Skill Metadata

Name
fusion-gene-detector
Description
Gene fusion detection skill for oncology applications with multiple caller integration

Fusion Gene Detector Skill

Purpose

Enable gene fusion detection for oncology applications with multiple caller integration.

Capabilities

  • RNA-based fusion calling
  • DNA-based fusion detection
  • Multi-caller consensus
  • Visualization of fusion events
  • Known fusion annotation
  • Clinical actionability assessment

Usage Guidelines

  • Use multiple callers for sensitivity
  • Build consensus from different algorithms
  • Annotate with known fusion databases
  • Visualize fusion breakpoints
  • Assess clinical actionability
  • Document caller combinations

Dependencies

  • STAR-Fusion
  • Arriba
  • FusionCatcher

Process Integration

  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)