Agent-Skills.md

Agent Skills: GA4GH Standards Validator Skill

GA4GH standards compliance skill for data sharing and interoperability

bioinformaticsID: a5c-ai/babysitter/ga4gh-standards-validator

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

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pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/ga4gh-standards-validator

Skill Files

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plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/ga4gh-standards-validator/SKILL.md

Skill Metadata

Name
ga4gh-standards-validator
Description
GA4GH standards compliance skill for data sharing and interoperability

GA4GH Standards Validator Skill

Purpose

Provide GA4GH standards compliance for data sharing and interoperability.

Capabilities

  • VCF/BAM format validation
  • htsget API compliance
  • Beacon protocol testing
  • DRS/WES/TES compliance
  • Data model validation
  • Interoperability testing

Usage Guidelines

  • Validate file formats against specifications
  • Test API compliance for data sharing
  • Implement Beacon for variant queries
  • Ensure workflow execution standards compliance
  • Validate data models for exchange
  • Document compliance status

Dependencies

  • GA4GH toolkits
  • htslib
  • Beacon v2

Process Integration

  • Genomic Data Governance (genomic-data-governance)
  • Reproducible Research Workflow (reproducible-research)