Agent-Skills.md

Agent Skills: HUMAnN Functional Profiler Skill

HUMAnN functional profiling skill for metagenomic pathway analysis

bioinformaticsID: a5c-ai/babysitter/humann-functional-profiler

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/humann-functional-profiler

Skill Files

Browse the full folder contents for humann-functional-profiler.

Download Skill

Loading file tree…

plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/humann-functional-profiler/SKILL.md

Skill Metadata

Name
humann-functional-profiler
Description
HUMAnN functional profiling skill for metagenomic pathway analysis

HUMAnN Functional Profiler Skill

Purpose

Provide HUMAnN functional profiling for metagenomic pathway analysis.

Capabilities

  • Gene family quantification
  • MetaCyc pathway abundance
  • UniRef annotation
  • Stratified functional profiles
  • Pathway coverage analysis
  • Custom database integration

Usage Guidelines

  • Run taxonomic profiling first
  • Quantify gene families and pathways
  • Stratify by organism when relevant
  • Analyze pathway coverage
  • Compare functional profiles
  • Document database versions

Dependencies

  • HUMAnN3
  • eggNOG-mapper
  • Prokka

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)