Agent-Skills.md

Agent Skills: IGV Genome Browser Skill

IGV integration skill for interactive genome visualization and review

bioinformaticsID: a5c-ai/babysitter/igv-genome-browser

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/igv-genome-browser

Skill Files

Browse the full folder contents for igv-genome-browser.

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plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/igv-genome-browser/SKILL.md

Skill Metadata

Name
igv-genome-browser
Description
IGV integration skill for interactive genome visualization and review

IGV Genome Browser Skill

Purpose

Enable IGV integration for interactive genome visualization and review.

Capabilities

  • BAM/VCF/BED visualization
  • Batch screenshot generation
  • Session management
  • Track customization
  • Region navigation
  • Multi-sample comparison

Usage Guidelines

  • Load appropriate reference genome
  • Configure tracks for analysis needs
  • Generate batch screenshots for reports
  • Save sessions for reproducibility
  • Navigate to regions of interest
  • Compare multiple samples visually

Dependencies

  • IGV
  • IGV.js
  • JBrowse2

Process Integration

  • Clinical Variant Interpretation (clinical-variant-interpretation)
  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)