Agent-Skills.md

Agent Skills: Kraken2 Taxonomic Classifier Skill

Kraken2 taxonomic classification skill for rapid metagenomic read assignment

bioinformaticsID: a5c-ai/babysitter/kraken2-taxonomic-classifier

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier

Skill Files

Browse the full folder contents for kraken2-taxonomic-classifier.

Download Skill

Loading file tree…

plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier/SKILL.md

Skill Metadata

Name
kraken2-taxonomic-classifier
Description
Kraken2 taxonomic classification skill for rapid metagenomic read assignment

Kraken2 Taxonomic Classifier Skill

Purpose

Provide Kraken2 taxonomic classification for rapid metagenomic read assignment.

Capabilities

  • k-mer based classification
  • Custom database creation
  • Confidence score filtering
  • Bracken abundance estimation
  • Multi-sample reporting
  • Memory-efficient operation

Usage Guidelines

  • Build or download appropriate databases
  • Set confidence thresholds for accuracy
  • Use Bracken for abundance estimation
  • Generate reports for visualization
  • Consider memory requirements
  • Document database versions

Dependencies

  • Kraken2
  • Bracken
  • Centrifuge

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)
  • 16S rRNA Microbiome Analysis (16s-microbiome-analysis)