Agent-Skills.md

Agent Skills: MetaPhlAn Profiler Skill

MetaPhlAn metagenomic profiling skill for species-level community composition

bioinformaticsID: a5c-ai/babysitter/metaphlan-profiler

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/library/specializations/domains/science/bioinformatics/skills/metaphlan-profiler

Skill Files

Browse the full folder contents for metaphlan-profiler.

Download Skill

Loading file tree…

library/specializations/domains/science/bioinformatics/skills/metaphlan-profiler/SKILL.md

Skill Metadata

Name
metaphlan-profiler
Description
MetaPhlAn metagenomic profiling skill for species-level community composition

MetaPhlAn Profiler Skill

Purpose

Enable MetaPhlAn metagenomic profiling for species-level community composition.

Capabilities

  • Clade-specific marker gene analysis
  • Species-level quantification
  • Strain-level profiling (StrainPhlAn)
  • Unknown species estimation
  • Multi-sample heatmaps
  • Comparative analysis

Usage Guidelines

  • Use latest marker database
  • Profile at species level for most analyses
  • Apply strain-level analysis when relevant
  • Visualize community composition
  • Compare across samples and conditions
  • Document database versions

Dependencies

  • MetaPhlAn4
  • StrainPhlAn
  • mOTUs

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)