Agent-Skills.md

Agent Skills: Singularity Container Manager Skill

Singularity container management skill for HPC-compatible containerized execution

bioinformaticsID: a5c-ai/babysitter/singularity-container-manager

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

Install this agent skill to your local

pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/singularity-container-manager

Skill Files

Browse the full folder contents for singularity-container-manager.

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plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/singularity-container-manager/SKILL.md

Skill Metadata

Name
singularity-container-manager
Description
Singularity container management skill for HPC-compatible containerized execution

Singularity Container Manager Skill

Purpose

Provide Singularity container management for HPC-compatible containerized execution.

Capabilities

  • Container building from recipes
  • Registry pull and caching
  • Bind mount configuration
  • GPU passthrough
  • MPI integration
  • Security compliance for HPC

Usage Guidelines

  • Build containers from definition files
  • Cache containers for repeated use
  • Configure bind mounts appropriately
  • Enable GPU for accelerated workloads
  • Integrate with MPI for parallel computing
  • Ensure HPC security compliance

Dependencies

  • Singularity/Apptainer
  • Docker
  • BioContainers

Process Integration

  • Reproducible Research Workflow (reproducible-research)
  • All analysis pipelines