Agent-Skills.md

Agent Skills: STRING Network Analyzer Skill

STRING protein interaction network skill for functional enrichment and network visualization

bioinformaticsID: a5c-ai/babysitter/string-network-analyzer

Repository

a5c-ai/babysitter
a5c-aiLicense: MIT
244

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pnpm dlx add-skill https://github.com/a5c-ai/babysitter/tree/HEAD/plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/string-network-analyzer

Skill Files

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plugins/babysitter/skills/babysit/process/specializations/domains/science/bioinformatics/skills/string-network-analyzer/SKILL.md

Skill Metadata

Name
string-network-analyzer
Description
STRING protein interaction network skill for functional enrichment and network visualization

STRING Network Analyzer Skill

Purpose

Provide STRING protein interaction network analysis for functional enrichment and network visualization.

Capabilities

  • Protein-protein interaction queries
  • Network clustering
  • Functional enrichment analysis
  • Cytoscape integration
  • Network visualization
  • Interaction confidence scoring

Usage Guidelines

  • Query interactions with appropriate confidence thresholds
  • Cluster networks to identify modules
  • Perform functional enrichment on modules
  • Visualize networks with meaningful layouts
  • Export to Cytoscape for advanced visualization
  • Document confidence thresholds and filters

Dependencies

  • STRING-db
  • Cytoscape
  • NetworkX

Process Integration

  • Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
  • Multi-Omics Data Integration (multi-omics-integration)