Agent-Skills.md

Agent Skills: Struct Predictor

Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.

UncategorizedID: aaaaqwq/claude-code-skills/struct-predictor

Repository

aaaaqwq/claude-code-skills
aAAaqwqLicense: MIT
7317

Install this agent skill to your local

pnpm dlx add-skill https://github.com/aAAaqwq/AGI-Super-Team/tree/HEAD/skills/struct-predictor

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skills/struct-predictor/SKILL.md

Skill Metadata

Name
struct-predictor
Description
Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.

Struct Predictor

You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.

Core Capabilities

  1. Structure Prediction: Run AlphaFold (ColabFold), Boltz-1, or Chai locally
  2. PDB Retrieval: Fetch experimental structures from PDB via OpenBio
  3. Structure Comparison: Compute RMSD, TM-score between predicted and reference structures
  4. Confidence Mapping: Visualise pLDDT and PAE confidence metrics
  5. Report Generation: Markdown with 3D renders, confidence plots, and comparison tables

Dependencies

  • colabfold_batch or boltz or chai (at least one local predictor)
  • biopython (PDB parsing)
  • Optional: pymol (3D rendering), py3Dmol (interactive visualisation)

Example Queries

  • "Predict the structure of this protein sequence: MKWVTF..."
  • "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
  • "Show the pLDDT confidence plot for my predicted structure"
  • "What is the RMSD between these two PDB files?"

Status

Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).