Agent Skills: Loki Logging with byteforge-loki-logging

Configure Grafana Loki logging using byteforge-loki-logging library for Python/Flask applications. Use when setting up Loki logging, configuring centralized logging, or adding structured JSON logging to any Python project.

UncategorizedID: jmazzahacks/byteforge-claude-skills/byteforge-loki-logging

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skills/byteforge-loki-logging/SKILL.md

Skill Metadata

Name
byteforge-loki-logging
Description
Configure Grafana Loki logging using byteforge-loki-logging library for Python/Flask applications. Use when setting up Loki logging, configuring centralized logging, or adding structured JSON logging to any Python project.

Loki Logging with byteforge-loki-logging

This skill helps you integrate Grafana Loki logging using the byteforge-loki-logging library, which handles structured JSON logging and asynchronous Loki shipping with graceful fallback.

When to Use This Skill

Use this skill when:

  • Starting a new Python/Flask application
  • You want centralized logging with Loki
  • You need structured JSON logs for production
  • You want easy local development with console logs

What This Skill Creates

  1. requirements.txt entry - Adds byteforge-loki-logging dependency (public GitHub library)
  2. Logging initialization - Adds configure_logging() call to main application file
  3. CA certificate configuration - Docker Compose volume mount for your Loki CA certificate
  4. Environment variable documentation - All required Loki configuration

Step 1: Gather Project Information

IMPORTANT: Before making changes, ask the user these questions:

  1. "What is your application tag/name?" (e.g., "myapp", "another-service")

    • This identifies your service in Loki logs
    • This becomes the application label in Loki — all services across the stack (Python and TypeScript) must use application as the label name, never app or service
  2. "What is your main application file?" (e.g., "app.py", "server.py", "myapp.py")

    • Where to add the logging configuration
  3. "What is your CA certificate filename?" (e.g., "loki-ca.pem", "my-org-ca.pem")

    • Required for secure Loki connection over TLS
    • If the user does not have one or their Loki endpoint does not use a private CA, this step can be skipped

Step 2: Add byteforge-loki-logging to requirements.txt

Add this line to requirements.txt:

# Logging configuration with Loki support (public GitHub library)
byteforge-loki-logging @ git+https://github.com/jmazzahacks/byteforge-loki-logging.git

Install the dependency:

pip install -r requirements.txt

Step 3: Configure Logging in Application

Add to the top of your main application file (e.g., {app_file}.py):

import os
from byteforge_loki_logging import configure_logging

# Configure logging with byteforge-loki-logging
# Use debug_local=True for local development, False for production with Loki
debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
log_level = os.environ.get('LOG_LEVEL', 'INFO')
configure_logging(
    application_tag='{application_tag}',
    debug_local=debug_mode,
    local_level=log_level
)

CRITICAL: Replace:

  • {app_file} -> Your main application filename (e.g., "myapp")
  • {application_tag} -> Your service name (e.g., "myapp")

Place this before creating your Flask app or any other initialization.

Structured JSON Logging

JSON formatting is enabled by default (json_format=True). Log records are formatted as:

{"logger": "myapp", "level": "INFO", "message": "Request processed", "user_id": "123", "latency_ms": 42}

Query in Grafana: {application="my-service"} | json | user_id="123"

Graceful Fallback

If the Loki connection test fails at startup, logging automatically falls back to stdout with a warning on stderr. Your application never crashes due to logging issues.

Step 4: Configure CA Certificate

If your Loki endpoint uses a private CA certificate, mount it into the container via Docker Compose as a read-only volume. Do not bake the certificate into the Dockerfile with COPY.

In docker-compose.yaml:

services:
  {app_name}:
    volumes:
      - /path/to/{ca_cert_filename}:/app/certs/loki-ca.pem:ro
    environment:
      - LOKI_CA_BUNDLE_PATH=/app/certs/loki-ca.pem

CRITICAL: Replace:

  • {app_name} -> Your service name in docker-compose
  • {ca_cert_filename} -> Your actual CA certificate filename from Step 1

The certificate will be available at /app/certs/loki-ca.pem inside the container.

If your Loki endpoint does not use a private CA (e.g., uses a publicly trusted certificate), skip this step and omit LOKI_CA_BUNDLE_PATH.

Step 5: Document Environment Variables

Add to README.md or .env.example:

Environment Variables

Logging Configuration (Local Development):

  • DEBUG_LOCAL - Set to 'true' for local development (console logs), 'false' for production (Loki)
    • Default: 'true'
    • Production: 'false'
  • LOG_LEVEL - Logging level: DEBUG, INFO, WARNING, ERROR, CRITICAL
    • Default: 'INFO'

Loki Configuration (Production Only):

ALL FOUR variables below are hard-required when DEBUG_LOCAL=false, regardless of whether your Loki endpoint uses a private or public CA. _validate_loki_env_vars() raises RuntimeError if any is unset or empty. Under gunicorn this crash-loops the worker visibly at boot; under celery the failure is silent unless you wired the _configure_or_die pattern from the Celery Workers section (see the "Celery worker running but no task logs in Loki, container is green" troubleshooting entry).

  • LOKI_ENDPOINT - Loki push API URL (e.g., https://loki.example.com/loki/api/v1/push)
  • LOKI_USER - Loki username for HTTP Basic Auth
  • LOKI_PASSWORD - Loki password for HTTP Basic Auth
  • LOKI_CA_BUNDLE_PATH - How the client validates Loki's TLS certificate. Required (non-empty) whenever the other three are set. Three valid shapes:
    • Private CA (Loki behind an internal PKI): path to a .pem file containing your CA cert, e.g. /app/certs/loki-ca.pem. Mount it into the container via docker-compose (see Step 4).
    • Public CA (Grafana Cloud, any Loki fronted by a widely-trusted issuer): path to the system CA bundle, e.g. /etc/ssl/certs/ca-certificates.crt on Debian/Ubuntu images, /etc/pki/tls/certs/ca-bundle.crt on RHEL/Alpine. This is the safe choice — TLS is still verified against the system trust store.
    • "false" (literal string) — disables SSL verification entirely. This is an escape hatch for dev/test/internal-network Loki where you accept the MITM risk. Do NOT reach for it as a shortcut for public-CA endpoints; the system-bundle path above is what you want there.

Logging Behavior

Local Development (DEBUG_LOCAL=true):

  • Logs output to console with human-readable formatting
  • Easy to read during development
  • No Loki connection required
  • No need to set LOKI_* variables

Production (DEBUG_LOCAL=false):

  • Logs output as structured JSON to Loki asynchronously (1-second batching)
  • All LOKI_* variables must be set
  • Queryable in Grafana
  • Automatic fallback to stdout if Loki is unreachable at startup

Step 6: Usage Examples

Local Development

# In .env or shell
export DEBUG_LOCAL=true
export LOG_LEVEL=DEBUG

pip install -r requirements.txt
python {app_file}.py

Production Deployment

Docker Compose example:

services:
  {app_name}:
    build:
      context: .
    volumes:
      - /path/to/{ca_cert_filename}:/app/certs/loki-ca.pem:ro
    environment:
      - DEBUG_LOCAL=false
      - LOG_LEVEL=INFO
      - LOKI_ENDPOINT=${LOKI_ENDPOINT}
      - LOKI_USER=${LOKI_USER}
      - LOKI_PASSWORD=${LOKI_PASSWORD}
      - LOKI_CA_BUNDLE_PATH=/app/certs/loki-ca.pem

NOTE: Set these in your .env file:

LOKI_ENDPOINT=https://loki.example.com/loki/api/v1/push
LOKI_USER=your_loki_user
LOKI_PASSWORD=your_loki_password

How It Works

The byteforge-loki-logging library provides:

  1. Automatic mode detection - Console logs for local dev, Loki for production
  2. Structured JSON logging - Consistent JSON format for Loki, enabled by default
  3. Async shipping - Background thread with 1-second batching for minimal performance impact
  4. Secure connection - Uses CA certificate for encrypted Loki communication
  5. Graceful fallback - Falls back to stdout if Loki is unreachable, never crashes your app
  6. Application tagging - Identifies your service in centralized logs via the application label

You don't need to:

  • Write JSON formatters
  • Configure logging handlers
  • Manage Loki client setup
  • Handle certificate validation
  • Worry about logging crashing your application

Just call configure_logging() and you're done!

Integration with Other Skills

Flask API Server

If using flask-smorest-api skill, add logging before creating Flask app:

import os
from flask import Flask
from byteforge_loki_logging import configure_logging

# Configure logging FIRST
debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
log_level = os.environ.get('LOG_LEVEL', 'INFO')
configure_logging(
    application_tag='my-api',
    debug_local=debug_mode,
    local_level=log_level,
)

# Then create Flask app
app = Flask(__name__)

# IMPORTANT: Propagate Flask's logger to the root logger so unhandled
# exceptions in route handlers reach Loki. Without this, Flask catches
# exceptions internally and logs them via werkzeug to stdout/stderr,
# bypassing the root logger that configure_logging() set up.
#
# DO NOT set app.logger's level here. Leaving it at NOTSET lets
# isEnabledFor()'s ancestor walk reach root and inherit LOG_LEVEL.
# Pinning to DEBUG would stop the walk at app.logger, so the level
# check passes, the record propagates to root (whose handler is
# NOTSET), and DEBUG lines reach Loki regardless of LOG_LEVEL.
# See the Troubleshooting entry for the full trace.
app.logger.handlers.clear()
app.logger.propagate = True

# ... rest of setup

Why this matters: Flask catches exceptions in route handlers and returns a 500 response, but by default it logs the traceback through its own app.logger using werkzeug's error handling — not through Python's root logger. Since configure_logging() configures the root logger, those tracebacks never reach Loki unless you clear Flask's default handlers and set propagate = True.

Flask + Gunicorn: Propagate All Dependency Loggers

When running Flask under gunicorn, werkzeug and gunicorn create their own loggers (werkzeug, gunicorn.error, gunicorn.access) with their own StreamHandler instances and set propagate=False. This means log messages from those loggers never reach the root logger — which is where configure_logging() attaches the Loki handler. All application logs go to stdout/stderr instead of Loki.

Everything must be done inside create_app() — not at module level — for two reasons:

  1. Logger override: Flask and gunicorn set up their loggers during app initialization and would override anything done earlier.
  2. Gunicorn fork/SSL: configure_logging() creates a Loki handler with a requests.Session and SSL context. If called at module level, this runs in gunicorn's master process before fork(). The SSL context doesn't survive the fork into worker processes, causing SSL errors on the first log messages until the session reconnects. Moving it into create_app() ensures the SSL context is created in the worker process where it will be used.
import os
import logging
from flask import Flask
from byteforge_loki_logging import configure_logging

def create_app() -> Flask:
    # Configure logging inside create_app() so it runs post-fork in the
    # gunicorn worker process. Module-level init causes SSL context issues
    # with the Loki handler because the SSL session doesn't survive fork().
    debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
    log_level = os.environ.get('LOG_LEVEL', 'INFO')
    configure_logging(
        application_tag='my-api',
        debug_local=debug_mode,
        local_level=log_level,
    )

    app = Flask(__name__)

    # Force Flask, werkzeug, and gunicorn loggers to propagate to root.
    # These loggers create their own StreamHandlers with propagate=False,
    # which bypasses the root logger's Loki handler.
    #
    # Do NOT setLevel() on ANY of these — not app.logger, not the deps.
    # Leaving them at NOTSET lets isEnabledFor()'s ancestor walk reach
    # root and inherit LOG_LEVEL. Pinning one to DEBUG stops the walk
    # there; the record propagates to root (whose handler is NOTSET)
    # and DEBUG lines reach Loki regardless of LOG_LEVEL. Same rule
    # applies to any propagate-to-root wiring elsewhere. See the
    # Troubleshooting entry for the full trace.
    app.logger.handlers.clear()
    app.logger.propagate = True

    for name in ('werkzeug', 'gunicorn', 'gunicorn.error', 'gunicorn.access'):
        dep_logger = logging.getLogger(name)
        dep_logger.handlers.clear()
        dep_logger.propagate = True

    # ... register blueprints, configure Api, etc.

    return app

# create_app() runs when gunicorn imports the module in the WORKER process
app = create_app()

CRITICAL: configure_logging() must be the first thing inside create_app(), before any code that logs. Do NOT call it at module level.

CRITICAL: The for loop clearing dependency loggers must run after Flask and Api are initialized (so their logger setup has already run), otherwise Flask/gunicorn will re-create their handlers and override your changes.

Multiprocessing / Forked Child Processes

The general rule: configure_logging() must be called in every process that logs. The Loki handler uses a background QueueListener thread and a requests.Session with an SSL context — neither survives fork(). A child process inherits a copy of the logging config with a dead handler, and logs go into a queue that nobody reads. No errors are raised because the queue accepts writes silently.

This applies to:

  • multiprocessing.Process target functions
  • os.fork() child processes
  • Any code that spawns child processes that emit logs

Fix: Call configure_logging() at the top of the child process entry point, before any logging:

import os
import logging
import multiprocessing
from byteforge_loki_logging import configure_logging

def run_job(job_id: str) -> None:
    """Target function for multiprocessing.Process — runs in a forked child."""
    # CRITICAL: The parent's Loki handler (QueueListener thread + requests.Session)
    # does not survive fork(). Re-initialize logging in the child process so it
    # gets its own handler, thread, and SSL context.
    debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
    log_level = os.environ.get('LOG_LEVEL', 'INFO')
    configure_logging(
        application_tag='my-worker',
        debug_local=debug_mode,
        local_level=log_level,
    )
    logger = logging.getLogger(__name__)

    logger.info(f"Starting job {job_id}")
    # ... do work ...
    logger.info(f"Finished job {job_id}")


# In the parent process:
process = multiprocessing.Process(target=run_job, args=(job_id,))
process.start()

Summary of where configure_logging() must be called:

| Process | Where to call | Why | |---------|--------------|-----| | Gunicorn worker | Inside create_app() | Runs post-fork in worker process | | multiprocessing.Process child | Top of target function | QueueListener thread + SSL context don't survive fork | | Direct os.fork() child | Immediately after fork in child branch | Same reason | | Celery MainProcess (master + beat) | @setup_logging.connect receiver | Also suppresses celery's default log config so MainProcess events reach root | | Celery prefork pool child | @worker_process_init.connect receiver | Fork issue as above; also raise worker_proc_alive_timeout — see Celery section |

Celery Workers

Celery is a fork-based worker pool, so the general multiprocessing rule applies — each prefork child needs its own configure_logging() after fork. Two Celery-specific traps make the naive "just call configure_logging in a signal receiver" recipe silently or catastrophically wrong; both must be handled together.

Trap 1 — the signal-swallow blackout. Celery's Signal.send wraps each receiver in try/except Exception and swallows the error, and setup_logging_subsystem still counts a failed setup_logging receiver as "logging was configured." So a Loki misconfig (DEBUG_LOCAL=false with any of the four LOKI_* vars missing → RuntimeError from _validate_loki_env_vars) leaves the worker running with zero root handlers attached. Tasks keep acking, nothing reaches Loki, and the container's health checks stay green — a silent blackout on the write path. Fix: raise SystemExit(1) from the receiver. SystemExit is a BaseException, not an Exception, so it escapes the swallow and kills the process loudly — the same fail-fast behavior your Flask container gets from create_app().

Trap 2 — the fork-window timeout race. worker_process_init receivers run inside billiard's child-startup window. Celery SIGKILLs any child not fully up within worker_proc_alive_timeout (default 4.0 seconds). But configure_logging()'s synchronous /ready probe against Loki is 3s connect + 3s read, and DNS resolution is unbounded by either — so when Loki degrades, every prefork child blows the 4s window and gets SIGKILL'd, and the pool enters a kill/respawn loop precisely during the outage you need logs from. Fix: raise worker_proc_alive_timeout in the Celery config (30.0s in the reference implementation) whenever a worker_process_init receiver calls configure_logging().

Fix: complete Celery app wired for both traps:

"""Celery application with Loki-routed logging."""

import logging
import os
import sys
from celery import Celery
from celery.signals import setup_logging, worker_process_init
from byteforge_loki_logging import configure_logging

redis_url = os.environ.get('MY_APP_REDIS_URL', 'redis://localhost:6379/0')

celery = Celery('my_app', broker=redis_url, include=['tasks'])

celery.conf.update(
    task_serializer='json',
    accept_content=['json'],
    # The worker_process_init hook below runs configure_logging() in each
    # prefork child, which probes the Loki endpoint synchronously (3s
    # connect + 3s read, and a hung DNS resolver isn't bounded by either).
    # Celery SIGKILLs any child that isn't up within this timeout
    # (default 4.0s) — leaving the default puts every child spawn in a
    # kill/respawn loop exactly when Loki is degraded.
    worker_proc_alive_timeout=30.0,
    # ... your other celery config (task_acks_late, beat_schedule, etc.) ...
)


def _configure_loki_logging() -> None:
    debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
    log_level = os.environ.get('LOG_LEVEL', 'INFO')
    configure_logging(
        application_tag='my-app',
        debug_local=debug_mode,
        local_level=log_level,
    )

    # Celery's loggers attach their own StreamHandlers with propagate=False,
    # bypassing the root logger's Loki handler. Clear and propagate; do NOT
    # setLevel() on any of them — see the Flask + Gunicorn section for why
    # pinning a child logger's level breaks LOG_LEVEL inheritance.
    # `celery.redirected` matters if celery's --without-mingle / worker CLI
    # enabled redirect_stdouts (which reroutes print()/sys.stdout writes
    # through logging); `celery.pool` carries billiard pool lifecycle.
    for name in ('celery', 'celery.worker', 'celery.task',
                 'celery.app.trace', 'celery.beat', 'celery.redirected',
                 'celery.pool'):
        dep_logger = logging.getLogger(name)
        dep_logger.handlers.clear()
        dep_logger.propagate = True


def _configure_or_die() -> None:
    # celery's Signal.send catches and swallows Exception from receivers —
    # AND still counts a failed receiver as "logging was configured", so a
    # misconfig (e.g. DEBUG_LOCAL=false with a LOKI_* var missing, which
    # raises RuntimeError) would leave the worker running with ZERO root
    # handlers: a silent logging blackout on the write path. SystemExit is
    # a BaseException, so it escapes the swallow and kills the process
    # loudly — the same crash-on-misconfig behavior the Flask container
    # gets from create_app().
    try:
        _configure_loki_logging()
    except Exception as exc:
        print(f"FATAL: logging configuration failed: {exc}", file=sys.stderr)
        raise SystemExit(1)


@setup_logging.connect
def _on_setup_logging(**kwargs) -> None:
    # Connecting to setup_logging fully suppresses celery's default
    # logging config (including worker_hijack_root_logger), so
    # MainProcess events (broker connect, "ready", beat schedule ticks)
    # reach our Loki handler instead of celery's stdout-only StreamHandler.
    _configure_or_die()


@worker_process_init.connect
def _on_worker_process_init(**kwargs) -> None:
    # Each prefork pool child needs its own configure_logging(): the
    # parent's QueueListener thread and requests.Session SSL context do
    # not survive fork(). Without this, child logs go to a dead queue.
    _configure_or_die()

Verification checklist:

  • Start the worker with a missing LOKI_* env var. Expect FATAL: logging configuration failed: ... on stderr followed by process exit, NOT a running worker that swallows tasks silently. If the worker starts, _configure_or_die isn't wired or setup_logging/worker_process_init isn't connected. (No broker needed — setup_logging fires from on_init_blueprint before any broker connection attempt.)
  • With Loki up and LOG_LEVEL=INFO, run a task that calls logger.debug(...) from a logging.getLogger(__name__) at module scope. It should NOT appear in Loki. If it does, one of the celery.* loggers in the propagation loop has been setLevel()'d somewhere.
  • Simulate Loki degradation by pointing LOKI_ENDPOINT at a black-hole endpoint (e.g. https://198.51.100.1/loki/api/v1/push). Workers should still start within 30s (not 4s), then log fallback warnings and continue serving tasks. If workers kill/respawn-loop, worker_proc_alive_timeout isn't set high enough.

MCP Server (FastMCP / uvicorn)

Use this section when integrating with an MCP server built on FastMCP (the high-level wrapper in the mcp Python SDK). Verified end-to-end against mcp==1.27.x / FastMCP streamable-http and sse transports on 2026-05-18.

mcp package version — bound to <2.0. Every import and constructor in this section (from mcp.server.fastmcp import FastMCP, FastMCP(...), mcp.streamable_http_app(), Context from mcp.server.fastmcp) is 1.x API. The 2.0.0 release (2026-07-28) renamed FastMCPMCPServer and moved mcp.server.fastmcpmcp.server.mcpserver, so this example silently breaks on the first fresh install that resolves to 2.x. Bound the requirement in your project's requirements.txt:

mcp>=1.3,<2.0

See the mcp-docker-deployment skill's requirements.txt subsection for the full rationale and the deliberate-migration path to 2.x.

The problem

FastMCP's mcp.run(transport="streamable-http") internally constructs a uvicorn.Config without passing log_config=. uvicorn falls back to its default LOGGING_CONFIG, which attaches its own StreamHandler instances to the uvicorn, uvicorn.access, and uvicorn.error loggers with propagate=False. Those records bypass Python's root logger entirely, which means the configure_logging() handler we installed on root never sees them — and HTTP access logs (POST /mcp ... 200) never reach Loki. The container looks alive (you can curl the MCP successfully), but Loki shows nothing under application=<your-tag>.

This is identical in shape to the Flask + Gunicorn case for the same reason (third-party loggers with their own handlers + propagate=False), but the fix is different because FastMCP doesn't expose a hook analogous to create_app().

The fix

FastMCP.run() does not accept a log_config kwarg. Bypass mcp.run() for HTTP transports and drive uvicorn directly, reusing the Starlette app that FastMCP builds:

import asyncio
import logging
import os

import uvicorn
from byteforge_loki_logging import configure_logging
from mcp.server.fastmcp import FastMCP

mcp = FastMCP("my-mcp-server", host="0.0.0.0", port=8000, stateless_http=True)

# ... register tools with @mcp.tool() ...


def main() -> None:
    # configure_logging() in main() runs BEFORE uvicorn boots. uvicorn doesn't
    # fork by default — unlike gunicorn — so the QueueListener + SSL session
    # the Loki handler creates are inherited safely by uvicorn's own coroutines.
    # No post-fork concerns here; this is the right place.
    debug_mode = os.environ.get("DEBUG_LOCAL", "true").lower() == "true"
    log_level = os.environ.get("LOG_LEVEL", "INFO")
    configure_logging(
        application_tag="my-mcp-server",
        debug_local=debug_mode,
        local_level=log_level,
    )

    transport = os.environ.get("MCP_TRANSPORT", "stdio")

    if transport == "stdio":
        # stdio has no uvicorn at all — JSON-RPC straight over stdin/stdout.
        # The log_config concerns below don't apply. FastMCP's mcp.run() is
        # correct for this case.
        mcp.run(transport="stdio")
        return

    # For streamable-http / sse, drive uvicorn directly so we can pass a
    # log_config that routes uvicorn.* loggers through the root logger
    # (where byteforge-loki-logging's handler ships to Loki).
    starlette_app = (
        mcp.streamable_http_app() if transport == "streamable-http"
        else mcp.sse_app()
    )
    uv_config = uvicorn.Config(
        starlette_app,
        host=os.environ.get("FASTMCP_HOST", "0.0.0.0"),
        port=int(os.environ.get("FASTMCP_PORT", "8000")),
        log_level=log_level.lower(),
        log_config=_uvicorn_log_config_propagating_to_root(),
    )
    asyncio.run(uvicorn.Server(uv_config).serve())


def _uvicorn_log_config_propagating_to_root() -> dict:
    """uvicorn log_config that routes uvicorn.* loggers through Python root.

    `disable_existing_loggers: False` is CRITICAL — without it, dictConfig
    silently wipes the root configuration that configure_logging() just
    installed. Setting `handlers: []` + `propagate: True` on each uvicorn
    logger means records bubble up to root where byteforge-loki-logging's
    handler picks them up.
    """
    return {
        "version": 1,
        "disable_existing_loggers": False,
        "loggers": {
            "uvicorn": {"handlers": [], "level": "INFO", "propagate": True},
            "uvicorn.access": {"handlers": [], "level": "INFO", "propagate": True},
            "uvicorn.error": {"handlers": [], "level": "INFO", "propagate": True},
        },
    }


if __name__ == "__main__":
    main()

Why this works (and why it's not a hack)

FastMCP.streamable_http_app() and FastMCP.sse_app() are documented public methods that return a Starlette app. The only thing mcp.run() does on top of uvicorn.run(starlette_app, ...) is wire host/port from FastMCP's settings — which we read directly from the environment anyway. So we're not bypassing internals; we're using FastMCP's documented building blocks plus uvicorn's documented log_config parameter.

If FastMCP ever adds a log_config kwarg to mcp.run(), this whole section becomes a one-line mcp.run(transport=..., log_config=_uvicorn_log_config_propagating_to_root()).

Tool-invocation logging

configure_logging() only sets up the transport — application-level log lines still need to come from somewhere. FastMCP tools are decorated with @mcp.tool() and may take an optional Context parameter (which FastMCP strips from the LLM-visible tool schema). Use it to read request headers and emit per-call audit logs:

import time
from mcp.server.fastmcp import Context

logger = logging.getLogger(__name__)


def _caller_from(ctx: Context) -> tuple[str | None, str | None]:
    """Return (X-Client-ID, X-Client-Name) if present on the current request.

    For HTTP transports (streamable-http, sse), nginx — or whatever gateway
    sits in front — typically forwards client identity via custom headers
    after upstream auth. For stdio, there's no HTTP request; this returns
    (None, None) and callers must handle that gracefully.
    """
    try:
        request = ctx.request_context.request
    except (ValueError, AttributeError):
        # No active request (stdio) or Context outside request scope
        return None, None
    if request is None or not hasattr(request, "headers"):
        return None, None
    return (
        request.headers.get("x-client-id"),
        request.headers.get("x-client-name"),
    )


class _LogToolCall:
    """Async context manager: time a tool call and emit a structured log line
    on exit (success or error). Wrap each tool body with `async with`."""

    def __init__(self, tool: str, ctx: Context) -> None:
        self._tool = tool
        self._ctx = ctx
        self._start = 0.0
        self._error: str | None = None

    async def __aenter__(self) -> "_LogToolCall":
        self._start = time.monotonic()
        return self

    async def __aexit__(self, exc_type: object, _exc: object, _tb: object) -> None:
        if exc_type is not None and isinstance(exc_type, type):
            self._error = exc_type.__name__
        caller_id, caller_name = _caller_from(self._ctx)
        duration_ms = round((time.monotonic() - self._start) * 1000, 2)
        logger.info(
            "tool_invoked",
            extra={
                "tool": self._tool,
                "caller_id": caller_id,
                "caller_name": caller_name,
                "duration_ms": duration_ms,
                "error": self._error,
            },
        )


@mcp.tool()
async def my_read_tool(some_arg: str, ctx: Context) -> dict:
    """..."""
    async with _LogToolCall("my_read_tool", ctx):
        return await do_the_thing(some_arg)

Under byteforge-loki-logging's JSON formatter, each extra= field becomes a top-level key in Loki, so you can query with {application="my-mcp-server"} | json | tool="my_read_tool" or ... | duration_ms > 100.

Verification

Both the uvicorn-through-root wiring and the tool instrumentation should be smoke-tested locally before deploying to a Loki-backed environment:

DEBUG_LOCAL=true \
LOG_LEVEL=INFO \
MCP_TRANSPORT=streamable-http \
FASTMCP_HOST=127.0.0.1 FASTMCP_PORT=8000 \
python -m my_mcp_package.server > /tmp/srv.log 2>&1 &
SRV=$!
sleep 2

# Initialize, then invoke a tool with custom client-identity headers
curl -sS -X POST http://127.0.0.1:8000/mcp \
    -H "Content-Type: application/json" \
    -H "Accept: application/json, text/event-stream" \
    -H "X-Client-ID: smoke-test" -H "X-Client-Name: SmokeTest" \
    -d '{"jsonrpc":"2.0","method":"initialize","id":1,"params":{"protocolVersion":"2024-11-05","capabilities":{},"clientInfo":{"name":"smoke","version":"0.1"}}}' \
    -o /dev/null

kill $SRV; wait $SRV 2>/dev/null

# You should see every line formatted by byteforge-loki-logging, including:
#   <ts> - uvicorn.error - INFO - Started server process [...]
#   <ts> - uvicorn.error - INFO - Uvicorn running on http://127.0.0.1:8000
#   <ts> - uvicorn.access - INFO - 127.0.0.1:... - "POST /mcp HTTP/1.1" 200
#   <ts> - __main__ - INFO - tool_invoked
# If `uvicorn.access` lines are formatted by uvicorn instead (look for
# "INFO:     " with the column-aligned padding), then log_config didn't take
# effect — re-check that you're driving uvicorn yourself, not via mcp.run().
grep -E "(uvicorn|tool_invoked)" /tmp/srv.log

Stdio transport

If your MCP server runs only over stdio (e.g. for local use with Claude Code, no HTTP), none of the above applies — there is no uvicorn at all. configure_logging() in main() followed by mcp.run(transport="stdio") is the complete picture. Application-level logger calls still ship to Loki via the root handler.

Common pitfalls

  • mcp.run(transport="streamable-http", log_config=...) — does NOT exist. FastMCP's run() accepts only transport and mount_path as of 2026-05-18. Passing log_config= raises TypeError. You must construct uvicorn.Config yourself.
  • disable_existing_loggers: True (the default!) silently wipes byteforge-loki-logging's root setup. Always set it to False in your uvicorn log_config dict.
  • Forgetting to set handlers: [] on uvicorn loggers. If you leave handlers at their default (["default"]), uvicorn's own StreamHandler stays attached AND records propagate to root — you get duplicate output. Empty list + propagate=True is the right combo.
  • Not adding ctx: Context to tool signatures. Without it, _caller_from() can't read the request headers and your audit logs are missing per-caller identity. FastMCP strips Context from the LLM-visible tool schema, so the surface to clients is unchanged.

Troubleshooting

Logs not appearing in Loki (production):

  • Verify DEBUG_LOCAL=false is set
  • Check all LOKI_* variables are correct
  • Test CA certificate path is accessible in container
  • Verify Loki endpoint is reachable from container
  • Check stderr for fallback warnings — if you see "Falling back to stdout", the Loki connection failed at startup

Missing CA certificate error:

  • Ensure the volume mount is correct in docker-compose.yaml
  • Verify LOKI_CA_BUNDLE_PATH points to /app/certs/loki-ca.pem
  • Check that the source file exists on the host at the mounted path

Runtime error: Missing required environment variables:

  • Only occurs when DEBUG_LOCAL=false. _validate_loki_env_vars() hard-requires ALL FOUR LOKI_* vars (endpoint, user, password, ca_bundle_path) to be non-empty — regardless of whether the endpoint uses a private or public CA.
  • Fix: set every one. For LOKI_CA_BUNDLE_PATH on a public-CA endpoint (Grafana Cloud etc.), point at the system trust store, e.g. /etc/ssl/certs/ca-certificates.crt on Debian/Ubuntu — NOT the string "false" unless you accept disabling TLS verification. See Step 5's LOKI_CA_BUNDLE_PATH block.
  • Check spelling (LOKI_, not MZ_LOKI_ or MATERIA_LOKI_).
  • Where you see it depends on the container: under gunicorn the RuntimeError crashes the worker at boot and gunicorn respawn-loops (visible in docker logs). Under celery WITHOUT the _configure_or_die wrapper from the Celery Workers section, celery's signal machinery swallows the exception AND the worker keeps running with zero root handlers — silent blackout. See "Celery worker running but no task logs in Loki, container is green" below.

Flask route exceptions not appearing in Loki:

  • Flask catches exceptions in route handlers and logs them via werkzeug to stdout/stderr, bypassing the root logger
  • Fix: clear Flask's default handlers and propagate to root logger (see Flask integration section above)
  • Symptoms: 500 errors appear in nginx/container logs but not in Grafana/Loki

app.logger.debug(...) shipping to Loki even when LOG_LEVEL=INFO:

  • An app.logger.setLevel(logging.DEBUG) call somewhere in create_app() pinned Flask's own logger below root's effective level. CPython's logging filters at two points: (a) at origination, isEnabledFor(level) walks the ancestor chain via getEffectiveLevel() and returns the first non-NOTSET level it finds; (b) during propagation, each ancestor's handlers are called, but the ancestors' own levels are NOT re-checked. So if app.logger is NOTSET, the walk-up reaches root, finds LOG_LEVEL (say INFO), and DEBUG is suppressed at origination. But if app.logger is pinned to DEBUG, the walk-up stops there and never reaches root — the record is created, propagates to root's handler (which is itself NOTSET), and reaches Loki. Ordinary module loggers (logging.getLogger(__name__) in blueprints) are unaffected because they remain NOTSET and correctly inherit LOG_LEVEL via the walk-up.
  • Fix: delete the app.logger.setLevel(...) call. Leave it at NOTSET so it inherits root's level (which configure_logging() set from LOG_LEVEL). Keep the handlers.clear() + propagate = True lines — those are still load-bearing for the propagation half of the story.
  • Symptoms: with LOG_LEVEL=INFO, blueprint DEBUG lines are suppressed but app.logger.debug(...) reaches Loki anyway. Under gunicorn the split is wider than it looks because app.logger is logging.getLogger('<module_name>') — the same object your app module itself logs through.

Loki SSL errors on first few startup log messages (gunicorn):

  • configure_logging() was called at module level, which runs in gunicorn's master process before fork(). The Loki handler's requests.Session and its SSL context were initialized pre-fork, then broke in the child worker because SSL contexts don't survive fork().
  • Fix: move configure_logging() inside create_app() so it runs post-fork in the worker process (see Flask + Gunicorn section above)
  • Symptoms: SSL errors only on the first few startup log messages, then everything works fine after the session recovers

Gunicorn/werkzeug logs going to stdout instead of Loki:

  • Werkzeug and gunicorn create their own loggers with propagate=False and their own StreamHandler instances
  • Fix: clear handlers and set propagate=True on werkzeug, gunicorn, gunicorn.error, and gunicorn.access loggers inside create_app() (see Flask + Gunicorn section above)
  • Symptoms: application logs visible in docker logs or container stdout but missing from Grafana/Loki

Logs from multiprocessing.Process child processes not appearing in Loki:

  • The parent's QueueListener thread and requests.Session do not survive fork(). The child inherits a dead handler — logs go into a queue that nobody reads. No errors are raised.
  • Fix: call configure_logging() at the top of the child process target function, before any logging (see Multiprocessing section above)
  • Symptoms: parent process logs appear in Loki, but all child process logs vanish silently

Celery worker running but no task logs in Loki, container is green:

  • The setup_logging / worker_process_init receiver raised an exception during configure_logging() (typically a RuntimeError from _validate_loki_env_vars when a LOKI_* env var is missing under DEBUG_LOCAL=false). Celery's Signal.send swallowed the exception AND counted the failed receiver as "logging was configured", so the worker ran on with zero root handlers. Tasks keep acking; nothing writes to Loki.
  • Fix: wrap the receiver body in try/except Exception → raise SystemExit(1). SystemExit is a BaseException, so it escapes celery's swallow and kills the worker loudly on misconfig. See the Celery Workers section for the full pattern.
  • Symptoms: celery worker is running, health checks pass, tasks return SUCCESS, but application=<your-tag> is completely absent from Loki. Stderr may show the RuntimeError traceback exactly once (from the swallow's default logger before it dies) but no further errors.

Celery workers kill/respawn-looping during a Loki outage:

  • configure_logging()'s synchronous /ready probe (3s connect + 3s read + unbounded DNS) is called from worker_process_init, which runs inside billiard's child-startup window. Celery SIGKILLs any child not up within worker_proc_alive_timeout (default 4.0s). When Loki is slow or DNS-degraded, every prefork child blows the window and gets killed before it can log a fallback warning.
  • Fix: set worker_proc_alive_timeout=30.0 (or higher) in the Celery config alongside the worker_process_init receiver. See the Celery Workers section.
  • Symptoms: docker logs <worker> shows a stream of celery.worker.consumer.MainProcess ... Process 'ForkPoolWorker-N' pid:X exited with 'signal 9 (SIGKILL)' messages during a broader Loki incident, and the worker never gets to the "ready" state.

MCP server logs / uvicorn access logs not appearing in Loki:

  • mcp.run(transport="streamable-http") internally calls uvicorn.Config(...) without a log_config kwarg, so uvicorn falls back to its default config that attaches StreamHandlers to uvicorn, uvicorn.access, and uvicorn.error with propagate=False. Those records bypass root and never reach the byteforge-loki-logging handler.
  • Fix: drive uvicorn directly via mcp.streamable_http_app() + uvicorn.Config(..., log_config={...}) (see the "MCP Server (FastMCP / uvicorn)" section above).
  • Symptoms: container is alive (MCP initialize handshake succeeds via curl), application=<your-tag> is completely absent from Loki, docker logs <container> shows uvicorn's native INFO: 127.0.0.1:... - "POST /mcp HTTP/1.1" 200 OK format with the column-aligned padding (rather than byteforge-loki-logging's <ts> - <logger> - <level> - <message> format).

Import error for byteforge_loki_logging:

  • Run pip install -r requirements.txt
  • Verify installed: pip list | grep byteforge-loki-logging

Example Implementation

# myapp.py
import os
import logging
from flask import Flask
from byteforge_loki_logging import configure_logging


def create_app() -> Flask:
    debug_mode = os.environ.get('DEBUG_LOCAL', 'true').lower() == 'true'
    log_level = os.environ.get('LOG_LEVEL', 'INFO')
    configure_logging(
        application_tag='myapp',
        debug_local=debug_mode,
        local_level=log_level,
    )

    app = Flask(__name__)

    # Leave app.logger and the dep loggers below at NOTSET so LOG_LEVEL
    # (applied to root by configure_logging) is honored via the ancestor
    # walk-up. See the Flask + Gunicorn section for the full rationale.
    app.logger.handlers.clear()
    app.logger.propagate = True

    for name in ('werkzeug', 'gunicorn', 'gunicorn.error', 'gunicorn.access'):
        dep_logger = logging.getLogger(name)
        dep_logger.handlers.clear()
        dep_logger.propagate = True

    # ... register blueprints, configure Api, etc.

    return app


app = create_app()
# docker-compose.yaml
services:
  myapp:
    volumes:
      - ./certs/loki-ca.pem:/app/certs/loki-ca.pem:ro
    environment:
      - DEBUG_LOCAL=false
      - LOG_LEVEL=INFO
      - LOKI_ENDPOINT=${LOKI_ENDPOINT}
      - LOKI_USER=${LOKI_USER}
      - LOKI_PASSWORD=${LOKI_PASSWORD}
      - LOKI_CA_BUNDLE_PATH=/app/certs/loki-ca.pem

This provides structured logging locally during development and automatic Loki shipping in production with secure encrypted connections.