Agent Skills: paper-three-pass-extraction

Domain-neutral methodology for autonomously extracting structured notes from a single academic paper via three escalating passes. Pass 1 (inspectional, ~10-15 min) reads title, abstract, intro, section headings, conclusion, references at a glance, then applies the Five Cs framework (Category, Context, Correctness, Contributions, Clarity). Pass 2 (content grasp, ~30-60 min) reads the full paper skipping proofs, answers main-argument / Big-Question / hypotheses / figure-by-figure / references / confusions. Pass 3 (deep understanding, ~1-4 hours, reserved for important papers) virtually re-implements, challenges every assumption, identifies what is NOT said, asks the falsifiability question. The methodology is internal to the agent applying it - questions are answered against the paper's content, never asked of the operator. Use when an extraction agent needs to convert dense academic prose into structured machine-and-human-readable notes - bio papers, CS papers, ML papers, statistics, math, any field.