Agent Skills: ASI Polynomial Operads Skill

ASI skill integrating polynomial functors, free monad/cofree comonad module action, operadic decomposition, and open games for compositional intelligence.

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Skill Metadata

Name
asi-polynomial-operads
Description
ASI skill integrating polynomial functors, free monad/cofree comonad

ASI Polynomial Operads Skill

"Pattern runs on matter: The free monad monad as a module over the cofree comonad comonad" — Libkind & Spivak (ACT 2024)

1. Polynomial Functors (Spivak)

Core Definition

A polynomial functor $p: \text{Set} \to \text{Set}$ is a sum of representables:

$$p \cong \sum_{i \in p(1)} y^{p[i]}$$

Where:

  • $p(1)$ = set of positions (questions, observations)
  • $p[i]$ = set of directions at position $i$ (answers, actions)

Morphisms (Dependent Lenses)

A lens $f: p \to q$ is a pair $(f_1, f^\sharp)$:

$$f_1: p(1) \to q(1) \quad \text{(on-positions)}$$ $$f^\sharp_i: q[f_1(i)] \to p[i] \quad \text{(on-directions, contravariant)}$$

Hom-set Formula

$$\text{Poly}(p, q) \cong \prod_{i \in p(1)} \sum_{j \in q(1)} p[i]^{q[j]}$$

2. Composition Products

Substitution ($\triangleleft$) — The Module Action

$$p \triangleleft q \cong \sum_{i \in p(1)} \sum_{\bar{j}: p[i] \to q(1)} y^{\sum_{a \in p[i]} q[\bar{j}(a)]}$$

Interpretation: Substitute $q$ into each "hole" of $p$.

Parallel/Dirichlet ($\otimes$)

$$p \otimes q \cong \sum_{i \in p(1)} \sum_{j \in q(1)} y^{p[i] \times q[j]}$$

Interpretation: Independent parallel execution.

Categorical Product ($\times$)

$$p \times q \cong \sum_{i \in p(1)} \sum_{j \in q(1)} y^{p[i] + q[j]}$$

3. Free Monad & Cofree Comonad

Cofree Comonad as Limit

The carrier $t_p$ of the cofree comonoid on $p$:

$$t_p = \lim \left( 1 \xleftarrow{!} p \triangleleft 1 \xleftarrow{p \triangleleft !} p^{\triangleleft 2} \triangleleft 1 \leftarrow \cdots \right)$$

Trees as Positions

$$t_p \cong \sum_{T \in \text{tree}_p} y^{\text{vtx}(T)}$$

  • $\text{tree}_p$ = set of $p$-trees (possibly infinite)
  • $\text{vtx}(T)$ = vertices (rooted paths) of tree $T$

Comonoid Structure

  • Counit (Extract): $\epsilon_p: t_p \to y$ — picks the root
  • Comultiplication (Duplicate): $\delta_p: t_p \to t_p \triangleleft t_p$ — path concatenation

Module Action: Pattern Runs On Matter

$$\Xi_{p,q} : \mathfrak{m}p \otimes \mathfrak{c}q \to \mathfrak{m}(p \otimes q)$$

Where:

  • $\mathfrak{m}p$ = free monad (Pattern, decision trees, wellfounded)
  • $\mathfrak{c}q$ = cofree comonad (Matter, behavior trees, non-wellfounded)

Examples: | Pattern | Matter | Runs On | |---------|--------|---------| | Interview script | Person | Interview | | Program | OS | Execution | | Voting scheme | Voters | Election | | Game rules | Players | Game | | Musical score | Performer | Performance |

4. Dynamical Systems (Libkind-Spivak)

Discrete Dynamical System

$$f^{upd}: A \times S \to S \quad \text{(update)}$$ $$f^{rdt}: S \to B \quad \text{(readout)}$$

Continuous Dynamical System

$$f^{dyn}: A \times S \to TS \quad \text{(dynamics: } \dot{s} = f^{dyn}(a, s) \text{)}$$ $$f^{rdt}: S \to B \quad \text{(readout)}$$

Wiring Diagram Composition

For $\phi: X \to Y$: $$\phi^{in}: X^{in} \to X^{out} + Y^{in}$$ $$\phi^{out}: Y^{out} \to X^{out}$$

Composed Update

$$\bar{f}^{upd}(y, s) := f^{upd}(\phi^{in}(y, f^{rdt}(s)), s)$$ $$\bar{f}^{rdt}(s) := \phi^{out}(f^{rdt}(s))$$

5. Compositional Algorithms (Bumpus)

Structured Decomposition

$$d: \int G \to \mathbf{K}$$

Where $\int G$ is the Grothendieck construction.

Complexity Bound

$$O\left(\max_{x \in VG} \alpha(dx) + \kappa^{|S|} \kappa^2\right) |EG|$$

Where:

  • $G$ = shape graph of decomposition
  • $S$ = feedback vertex set
  • $\kappa$ = max local solution space size
  • $\alpha(c)$ = time to compute sheaf on object $c$

Tree-Shaped Bound

For tree-shaped decompositions ($|S| = 0$): $$O(\kappa^2) |EG|$$

6. Cohomological Obstructions (Bumpus)

Čech Cohomology

$$H^n(X, \mathcal{U}, F) := \ker(\delta^n) / \text{im}(\delta^{n-1})$$

Global Existence Constraint

$$FX \neq \emptyset \iff H^0(X, \mathfrak{M}F) = 0$$

Interpretation: A problem has a solution iff the zeroth cohomology of its model-collecting presheaf is trivial.

GF(3) Connection

While Bumpus uses $\mathbb{Z}[S]$ (free Abelianization), the methods generalize to:

  • $\text{Vect}(\mathbb{F}_3)$ — vector spaces over GF(3)
  • Balanced ternary conservation = cohomological constraint

7. Spined Categories (Bumpus)

Definition

A spined category $(\mathcal{C}, \Omega, \mathfrak{P})$:

  • $\Omega: \mathbb{N}_{=} \to \mathcal{C}$ — the spine functor
  • $\mathfrak{P}$ — proxy pushout operation

Proxy Pushout

For span $G \xleftarrow{g} \Omega_n \xrightarrow{h} H$: $$G \xrightarrow{\mathfrak{P}(g,h)_g} \mathfrak{P}(g,h) \xleftarrow{\mathfrak{P}(g,h)_h} H$$

Chordal Objects (Recursive)

Smallest set $S$ where:

  1. $\Omega_n \in S$ for all $n$
  2. $\mathfrak{P}(a,b) \in S$ for $A, B \in S$ and arrows to $\Omega_n$

Width/Triangulation

$$\Delta[X] = \min { \text{width}(\delta) \mid \delta: X \hookrightarrow H \text{ pseudo-chordal}}$$

8. Open Games (Hedges)

Parametrised Lens (Arena)

ParaLens p q x s y r = (get, put)
  get : p → x → y        -- forward
  put : p → x → r → (s, q)  -- backward

The 6 wires:

  • x = observed states (from past)
  • y = output states (to future)
  • r = utilities received (from future)
  • s = back-propagated utilities (to past)
  • p = strategies (parameters)
  • q = rewards (co-parameters)

Sequential Composition

(MkLens get put) >>>> (MkLens get' put') =
  MkLens
    (\(p, p') x -> get' p' (get p x))           -- compose forward
    (\(p, p') x t ->
      let (r, q') = put' p' (get p x) t         -- future first
          (s, q) = put p x r                     -- then past
      in (s, (q, q')))

Key insight: Backward pass = constraint propagation / abduction.

Equilibrium

$$E_G(x, k) := \varepsilon_G(x; A_G; k)$$

Where $\varepsilon = \bigotimes_{p \in P} \varepsilon_p$ is the joint selection function.

9. Integration: DiscoHy Operads

The 7 Operad Network

| Operad | Trit | Description | |--------|------|-------------| | Little Disks (E₂) | +1 | Non-overlapping disk configurations | | Cubes (E_∞) | -1 | Infinite-dimensional parallelism | | Cactus | -1 | Trees with cycles (self-modification) | | Thread | 0 | Linear continuations + DuckDB | | Gravity | -1 | Moduli M_{0,n} with involutions | | Modular | +1 | All genera, runtime polymorphism | | Swiss-Cheese | +1 | Open/closed for forward-only learning |

GF(3) Total: $(+1) + (-1) + (-1) + (0) + (-1) + (+1) + (+1) = 0$ ✓

Libkind-Spivak Dynamical Operads

| Operad | Trit | Type | |--------|------|------| | Directed (⊳) | +1 | Output → Input wiring | | Undirected (○) | -1 | Interface matching via pullback | | Machines | 0 | State machines with dynamics | | Dynamical | +1 | Open ODEs |

10. General Intelligence Requirements (Swan/Hedges)

From "Road to General Intelligence":

Value Proposition

General intelligence must:

  1. Perform work on command — respond to dynamic goal changes
  2. Scale to real-world concerns
  3. Respect safety constraints
  4. Be explainable and auditable

Structural Causal Model

$$X_i = f_i(\text{PA}_i, U_i), \quad i = 1, \ldots, n$$

Where:

  • $\text{PA}_i$ = parent nodes
  • $U_i$ = exogenous noise (jointly independent)

Ladder of Causality

  1. Observational — statistical learning
  2. Interventional — setting variables despite natural processes
  3. Counterfactual — inferences from alternate histories

Lens-Based Abduction

| Component | Role | |-----------|------| | get (forward) | Induction / forward inference | | put (backward) | Abduction / constraint propagation | | Selection function | Attention mechanism | | Equilibrium checking | Reflective reasoning |

11. Commands

# Run polynomial functor demo
just poly-functor-demo

# Test free monad / cofree comonad pairing
just monad-test

# Run DiscoHy operads
python3 src/operads/relational_operad_interleave.py

# Run Libkind-Spivak dynamical systems
python3 src/operads/libkind_spivak_dynamics.py

# Check GF(3) conservation
just gf3-verify

12. File Locations

lib/
├── free_monad.rb              # Pattern (decision trees)
├── cofree_comonad.rb          # Matter (behavior trees)
├── runs_on.rb                 # Module action implementation
└── discohy.hy                 # Hy operad implementations

src/music_topos/
├── free_monad.clj             # Clojure Pattern
├── cofree_comonad.clj         # Clojure Matter
├── runs_on.clj                # Module action
└── operads/
    ├── relational_operad_interleave.py
    ├── libkind_spivak_dynamics.py
    └── infinity_operads.py

scripts/
├── discohy_operad_1_little_disks.py
├── discohy_operad_2_cubes.py
├── discohy_operad_3_cactus.py
├── discohy_operad_4_thread.py
├── discohy_operad_5_gravity.lisp
├── discohy_operad_6_modular.bb
└── discohy_operad_7_swiss_cheese.py

13. References

  1. Spivak, D.I.Polynomial Functors: A General Theory of Interaction (2022)
  2. Libkind, S. & Spivak, D.I.Pattern Runs on Matter (ACT 2024)
  3. Spivak, D.I.Dynamical Systems and Sheaves (2019)
  4. Bumpus, B.M.Compositional Algorithms on Compositional Data (2024)
  5. Bumpus, B.M.Spined Categories (2023)
  6. Bumpus, B.M.Cohomology Obstructions (2024)
  7. Swan, J. & Hedges, J. et al.The Road to General Intelligence (Springer 2022)
  8. Hedges, J.Open Games with Agency (2023)

14. See Also

  • acsets — Algebraic databases (schema category)
  • discohy-streams — 7 operad variants with GF(3) balance
  • triad-interleave — Balanced ternary scheduling
  • world-hopping — Badiou triangle navigation
  • open-games — Bidirectional transformations

Scientific Skill Interleaving

This skill connects to the K-Dense-AI/claude-scientific-skills ecosystem:

Graph Theory

  • networkx [○] via bicomodule
    • Universal graph hub

Bibliography References

  • category-theory: 139 citations in bib.duckdb
  • polynomial-functors: 8 citations in bib.duckdb
  • operads: 5 citations in bib.duckdb

Cat# Integration

This skill maps to Cat# = Comod(P) as a bicomodule in the equipment structure:

Trit: 0 (ERGODIC)
Home: Prof
Poly Op: ⊗
Kan Role: Adj
Color: #26D826

GF(3) Naturality

The skill participates in triads satisfying:

(-1) + (0) + (+1) ≡ 0 (mod 3)

This ensures compositional coherence in the Cat# equipment structure.