Agent-Skills.md

Agent Skills: bmorphism-interactome Skill

GitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.

UncategorizedID: plurigrid/asi/bmorphism-interactome

Repository

plurigrid/asi
plurigridLicense: MIT
165

Install this agent skill to your local

pnpm dlx add-skill https://github.com/plurigrid/asi/tree/HEAD/plugins/asi/skills/bmorphism-interactome

Skill Files

Browse the full folder contents for bmorphism-interactome.

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plugins/asi/skills/bmorphism-interactome/SKILL.md

Skill Metadata

Name
bmorphism-interactome
Description
GitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.

bmorphism-interactome Skill

Mapping the cobordisms between research communities via shared contributors

Profile: bmorphism (Barton Rhodes)

@bmorphism | 255 followers | 1.6k following
@plurigrid founder | San Francisco
"Parametrised optics model cybernetic systems"

Core Repositories

| Repo | Stars | Description | Trit | |------|-------|-------------|------| | Gay.jl | 3 | Wide-gamut color sampling + SPI | 0 | | agent-o-shiva | - | Rama agent platform fork | 0 | | GeoACSets.jl | - | Categorical GIS | 0 | | bafishka | 1 | Fish + Steel Clojure | -1 | | ocaml-mcp-sdk | 60 | OCaml MCP SDK | -1 | | babashka-mcp-server | 16 | Babashka MCP | -1 | | multiverse-color-game | - | VisionPro holographic | +1 |

Plurigrid Organization (542 repos)

plurigrid: "building for a more agentic mesoscale 🦆"
├── asi/                    # "everything is topological chemputer!"
├── UnwiringDiagrams.jl     # Worlding/Unworlding Uexküll
├── vcg-auction/            # VCG auctions in Rust
├── microworlds/            # Agent simulations
├── risc0-cosmwasm/         # zkVM + CosmWasm
└── skillz/                 # Anthropic skills fork

Interactome Clusters

Cluster 1: Topos Institute ↔ AlgebraicJulia

Bridge Authors:

  • olynch - poly, Catlab.jl, ACSets.jl
  • epatters - Catlab lead, Topos
  • kasbah - Senior engineer @ Topos

Cobordism:

plurigrid/UnwiringDiagrams.jl ←fork← AlgebraicJulia/WiringDiagrams.jl
           ↓                                    ↓
    "Umwelt Worlding"                   Compositional Systems
           ↓                                    ↓
      Gay.jl SPI ←───────────────────→ ToposInstitute/poly

Cluster 2: Anthropic Engineers

bmorphism follows:

  • klazuka (Keith Lazuka)
  • simonster (Simon Kornblith)
  • domdomegg (adam jones)
  • ericharmeling

Cluster 3: Julia Scientific

  • ViralBShah - Julia co-creator, JuliaHub CEO
  • EnzymeAD - Automatic differentiation
  • gdalle - SparseMatrixColorings.jl
  • andyferris - ElaraAI

Cluster 4: Emacs/Clojure

  • fogus - Cognitect/Nubank
  • Chouser - Clojure core
  • tvraman - Emacspeak
  • ept (Martin Kleppmann) - DDIA author, CRDTs

Cluster 5: Applied Category Theory

  • jules-hedges - Open games, parametrised optics
  • statebox - awesome-applied-ct
  • AlgebraicJulia - Catlab ecosystem

Commands

# Explore following list
gh api users/bmorphism/following --paginate --jq '.[].login'

# Get repo details
gh api repos/bmorphism/Gay.jl --jq '{stars: .stargazers_count, desc: .description}'

# Find shared contributors
gh api repos/AlgebraicJulia/Catlab.jl/contributors --jq '.[].login' > catlab_contribs.txt
gh api repos/ToposInstitute/poly/contributors --jq '.[].login' > poly_contribs.txt
comm -12 <(sort catlab_contribs.txt) <(sort poly_contribs.txt)

# Plurigrid repos by language
gh api orgs/plurigrid/repos --paginate --jq '.[] | select(.language == "Julia") | .name'

GF(3) Classification

| Trit | Role | Repos | |------|------|-------| | -1 (MINUS) | Infrastructure | MCP servers, bafishka, CategoricalTowers | | 0 (ERGODIC) | Bridges | Gay.jl, GeoACSets, agent-o-shiva | | +1 (PLUS) | Applications | multiverse-color-game, gay-hy, xf.jl |

Key Insights

  1. Parametrised Optics - bmorphism's bio references jules-hedges' work on cybernetic systems
  2. Topological Chemputer - plurigrid/asi connects Cronin's chemputer to categorical systems
  3. UnwiringDiagrams - Fork of AlgebraicJulia for "Uexküll Umweltung" (environment-world)
  4. MCP Constellation - Multiple MCP servers forming distributed tool network

Related Skills

  • gh-interactome - General GitHub network discovery
  • bmorphism-stars - 2155 starred repos index
  • gay-julia - Gay.jl color integration
  • topos-catcolab - CatColab collaboration
  • acsets-algebraic-databases - ACSets patterns

Scientific Skill Interleaving

This skill connects to the K-Dense-AI/claude-scientific-skills ecosystem:

Graph Theory

  • networkx [○] via bicomodule

Bibliography References

  • general: 734 citations in bib.duckdb

Cat# Integration

This skill maps to Cat# = Comod(P) as a bicomodule in the equipment structure:

Trit: 0 (ERGODIC)
Home: Prof
Poly Op: ⊗
Kan Role: Adj
Color: #26D826

GF(3) Naturality

The skill participates in triads satisfying:

(-1) + (0) + (+1) ≡ 0 (mod 3)

This ensures compositional coherence in the Cat# equipment structure.