pysam

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

genomicsngsfile-formatsdata-processing

ovachiever

81

python-pipeline

Python data processing pipelines with modular architecture. Use when building content processing workflows, implementing dispatcher patterns, integrating Google Sheets/Drive APIs, or creating batch processing systems. Covers patterns from rosen-scraper, image-analyzer, and social-scraper projects.

pythondata-processingpipelineworkflow-automation

jamditis

1

hic-normalization

Automatically detect and normalize Hi-C data. Only .cool or .mcool file is supported. All .mcool files are then checked for existing normalization (supports bins/weight only) and balanced if none of the normalizations exist.

hicnormalizationcool-formatmcool-format

BIsnake2001

32