scholar-evaluation
Systematic framework for evaluating scholarly and research work based on the ScholarEval methodology. This skill should be used when assessing research papers, evaluating literature reviews, scoring research methodologies, analyzing scientific writing quality, or applying structured evaluation criteria to academic work. Provides comprehensive assessment across multiple dimensions including problem formulation, literature review, methodology, data collection, analysis, results interpretation, and scholarly writing quality.
openalex-database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
research
Conduct comprehensive academic research using OpenAlex, PDF extraction, paper search MCPs, and web search. Always produces comprehensive reports with 5+ evidence cards covering conflicting ideas and best approaches. Integrates academic papers (high weight) and non-academic sources (blogs, docs - lower weight but valuable for SOTA). Use when: (1) Researching software architecture patterns, (2) Finding academic papers on technical topics, (3) Conducting literature reviews, (4) Analyzing research papers for evidence-based decisions, (5) Building evidence cards from papers, (6) Finding related works and citations, or (7) When you need grounded, paper-backed technical recommendations. Triggers: research, find papers, literature review, evidence-based, academic research, compare approaches, what does research say, find studies on, search for papers about.
analyzing-research-documents
Extracts high-value insights from research documents, RCAs, design docs, and memos - filters aggressively to return only actionable information. Research equivalent of analyzing-implementations skill.
content-research
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Getting Started with Research Superpowers
Introduction to literature search & review skills - systematic paper finding, screening, extraction, and citation traversal
papi
Help with paper references using paperpipe (papi). Use when user asks about papers, wants to verify code against a paper, needs paper context for implementation, or asks about equations/methods from literature.
researcher
Researches topics in-depth and generates comprehensive summaries and references. Use when trying to deeply understand a topic or use a new framework.
research
Use codex web search for technical research, output reports with complete citation links. Focus on key results users care about, minimize irrelevant content.
content-research-writer
Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.
synthesis-and-analogy
Use when synthesizing information from multiple sources (literature review, stakeholder feedback, research findings, data from different systems), creating or evaluating analogies for explanation or problem-solving (cross-domain transfer, "X is like Y", structural mapping), combining conflicting viewpoints into unified framework, identifying patterns across disparate sources, finding creative solutions by transferring principles from one domain to another, testing whether analogies hold (surface vs deep similarities), or when user mentions "synthesize", "combine sources", "analogy", "like", "similar to", "transfer from", "integrate findings", "what's it analogous to".
updating-knowledge
Systematic research methodology for building comprehensive, current knowledge on any topic. Requires web_search tool. Use when questions require thorough investigation, recent developments post-cutoff, synthesis across multiple sources, or when Claude's knowledge may be outdated or incomplete. Triggered by "Research", "Investigate", "What's current on", "Latest info on", complex queries needing validation, or technical topics with recent changes.
data-synthesis
Synthesize findings from multiple research sources into coherent insights. Use when combining data from different sub-agents or research threads.
researching
Comprehensive research with cited sources. Use for complex research that should be verified and persist.
systematic-literature-review
当用户需要做系统综述/文献综述/related work/相关工作/文献调研时使用：AI 自定检索词，多源检索→去重→AI 逐篇阅读并评分（1–10分语义相关性与子主题分组）→按高分优先比例选文→自动生成"综/述"字数预算（70% 引用段 + 30% 无引用段，三次采样取均值）→资深领域专家自由写作（固定摘要/引言/子主题/讨论/展望/结论），保留正文字数与参考文献数硬校验，强制导出 PDF 与 Word。支持多语言翻译与智能编译（en/zh/ja/de/fr/es）。
research
Research libraries, APIs, and patterns using searchGitHub and Exa tools. Finds real-world implementations and saves structured reports to docs/research/. Use when investigating technologies, debugging issues, or comparing options.
scientific-writing
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
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