string-database
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
bv
Beads Viewer - Graph-aware triage engine for Beads projects. Computes PageRank, betweenness, critical path, and cycles. Use --robot-* flags for AI agents.
network-debugging
Debug network issues using browser tools and network analysis. Diagnose connection problems, latency, and data transmission issues.
Network Analysis
Analyze network structures, identify communities, measure centrality, and visualize relationships for social networks and organizational structures
categorizing-bsky-accounts
Analyze and categorize Bluesky accounts by topic using keyword extraction. Use when users mention Bluesky account analysis, following/follower lists, topic discovery, account curation, or network analysis.
string-database
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.