multi-repository-orchestrator
Coordinate development workflows across multiple Git repositories with synchronized branching, batch commits, cross-repo operations, and monorepo-like workflows for microservices and multi-package projects.
repository-analyzer
Analyzes codebases to generate comprehensive documentation including structure, languages, frameworks, dependencies, design patterns, and technical debt. Use when user says "analyze repository", "understand codebase", "document project", or when exploring unfamiliar code.
cloudflare-d1
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root-cause-tracing
Use when errors occur deep in execution and you need to trace back to find the original trigger - systematically traces bugs backward through call stack, adding instrumentation when needed, to identify source of invalid data or incorrect behavior
rdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
cloudflare-full-stack-scaffold
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reportlab
PDF generation toolkit. Create invoices, reports, certificates, forms, charts, tables, barcodes, QR codes, Canvas/Platypus APIs, for professional document automation.
hugo
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claude-api
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scanpy
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
cellxgene-census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
scikit-learn
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
scikit-survival
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.
scvi-tools
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.
seaborn
Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.
pytorch-lightning
Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.
cloudflare-images
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uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
matplotlib
Foundational plotting library. Create line plots, scatter, bar, histograms, heatmaps, 3D, subplots, export PNG/PDF/SVG, for scientific visualization and publication figures.
cloudflare-kv
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deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
string-database
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
debug
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managing-services
Centrally manages Docker containers and services. Supports service registration, listing, status updates, and port conflict detection. Use for "서비스 등록", "서비스 목록", "포트 확인", "컨테이너 관리", "docker 상태" requests.
managing-context
Discovers and loads relevant project context from markdown documentation before each task. Matches context documents based on keywords, file paths, and task types. Use at task start to access project plans, architecture, and implementation status.
indexing-static-context
Provides an index of global static context files in ~/.agents/. Returns appropriate static file paths for natural language queries like "내 정보", "보안 규칙". Use when other skills or agents need to locate reference information.
managing-context-worktree
Evaluates context similarity between new and existing work, automatically creating git worktree on a new branch when tasks differ. Activates on task start, new feature implementation, or switching to different issues.
committing-and-creating-pr
Guides git commit and PR creation with security validation to prevent sensitive information leaks. Activates on "커밋", "commit", "PR", "pull request" requests. Enforces consistent commit style.
preparing-iac-deployment
Prepares IaC project deployment by analyzing the current project and generating K8s manifests, Dockerfiles, CI/CD workflows in standardized structure. Use for "배포 준비", "IaC 설정", "k8s 매니페스트", "deploy prep" requests.
reviewing-code-multi-ai
Orchestrates multiple AI tools (Claude, Codex, Gemini, Droid) for comprehensive code review from multiple perspectives. Use for "멀티 AI 리뷰", "코드 리뷰", "종합 리뷰" requests or when thorough multi-agent review is needed.
automating-browser
Provides Playwright-based browser automation and E2E testing. Supports screenshots, web scraping, and form automation. Use for "브라우저", "스크린샷", "E2E 테스트", "웹 스크래핑" requests.
looping-pr-reviews
Waits for PR reviews and automatically applies fixes in a loop. Analyzes review comments and commits corrections until approval. Use for "리뷰 대기", "리뷰 반영", "자동 리뷰 수정", "review loop" requests.
managing-tasks
Integrates with Task Master CLI (tm) for AI-powered project task management. Use for "다음 작업", "작업 목록", "tm", "task", "작업 상태" requests or when managing project tasks.
automating-appstore-connect
Automates App Store Connect via JWT API/Playwright hybrid. Supports app info, builds, TestFlight deployment, screenshot upload, and app submission. Use for "ASC", "TestFlight", "앱스토어", iOS deployment tasks.
managing-discord
Manages Discord servers/channels via REST API. Supports channel CRUD, permissions, messaging, and webhooks. Use for "Discord", "디스코드", "채널 관리", "discord bot" requests.
integrating-search-console
Integrates with Google Search Console API. Supports search performance analysis, URL inspection, sitemap management, and site verification. Use for "GSC", "서치콘솔", "검색 성과", "SEO 분석" requests.
managing-kubernetes
Manages Kubernetes clusters via kubectl. Supports pod/deployment/service management, log viewing, port-forwarding, and debugging. Use for "k8s", "kubectl", "파드", cluster management tasks.
uploading-to-notion
Uploads Claude session summaries or markdown reports to Notion. Use for "노션 업로드", "결과 저장", "notion 정리", "세션 요약", "리포트 업로드", "보고서 작성" requests.
managing-obsidian-tasks
Reads and manages tasks from Obsidian Vault's TaskManager. Supports Board.md (Kanban), Table.md (Dataview), Notes/*, with automatic workspace project sync. Use for "작업 목록", "할일 조회", "task 읽기", "obsidian 작업" requests.
writing-to-obsidian
Uploads documents to Obsidian Vault. Saves project context to workspace/{project}/context/, research/reports to articles/ with YYYY-MM-DD prefix. Use for "obsidian 업로드", "옵시디언 저장", "vault 업로드", "아티클 저장" requests.
developing-slack-apps
Develops Slack apps and API integrations. Supports Bolt framework, Block Kit UI, event handling, and slash commands. Use for "Slack", "슬랙", "봇", "webhook" requests or Slack app development.
managing-vault-secrets
Manages credentials and API keys from Vaultwarden. Auto-triggers when credentials are needed. Use for "vault 조회", "API 키 가져와", "비밀번호 저장", "secret 등록" requests.
karpathy-guidelines
Behavioral guidelines to reduce common LLM coding mistakes. Use when writing, reviewing, or refactoring code to avoid overcomplication, make surgical changes, surface assumptions, and define verifiable success criteria.
managing-skills
Manages the skill ecosystem and maintains quality. Provides skill status overview, quality analysis, issue diagnosis, improvement suggestions, auto-fixes, and new skill creation guides. Use for "스킬 분석", "스킬 현황", "스킬 만들기", "스킬 개선" requests.
recommending-skills
Automatically recognizes and recommends suitable skills for user requests. Discovers helpful installed skills even without explicit skill requests. Implicitly activates on all user requests.
processing-audio
Converts and processes audio files using ffmpeg. Supports format conversion, sample rate changes, mono/stereo conversion, and segment splitting. Use for "오디오 변환", "wav 변환", "샘플레이트", "ffmpeg" requests.
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