benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
automl-optimizer
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astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
anndata
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
alphafold-database
Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
alpha-vantage
Access real-time and historical stock market data, forex rates, cryptocurrency prices, commodities, economic indicators, and 50+ technical indicators via the Alpha Vantage API. Use when fetching stock prices (OHLCV), company fundamentals (income statement, balance sheet, cash flow), earnings, options data, market news/sentiment, insider transactions, GDP, CPI, treasury yields, gold/silver/oil prices, Bitcoin/crypto prices, forex exchange rates, or calculating technical indicators (SMA, EMA, MACD, RSI, Bollinger Bands). Requires a free API key from alphavantage.co.
aeon
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
adaptyv
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
nextjs-app-router
PostHog integration for Next.js App Router applications
birdmate
APM project for birdmate
vue3-naiveui-fsd
Senior-level Vue 3 + Naive UI + Feature-Sliced Design with TypeScript, Clean Code & SOLID principles
tailwind-v4
Tailwind CSS v4 with CSS-first configuration, @theme directive, OKLCH colors, and Vite integration. Use for modern utility-first styling with the new v4 architecture.
vue-expert
Use when building Vue 3 applications with Composition API, Nuxt 3, Naive ui , or Quasar. Invoke for Pinia, TypeScript, PWA, Capacitor mobile apps, Vite configuration.
vue-fsd
Feature-Sliced Design architecture for Vue 3 applications. Use when structuring large-scale Vue projects with clear boundaries, scalable folder structure, and maintainable code organization.
finishing-branch
End-of-feature workflow for development branches. Verifies tests pass, generates PR description, chooses merge strategy, cleans up worktrees, and manages branch lifecycle. Triggers on "create PR", "merge", "finishing", "branch cleanup", "ready to merge", or at end of feature work.
finished-audit
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context-protocol
Slop-prevention middleware. Run before any design or code task to gather sources, then produce a Plan Mode block before touching any file. Eliminates hardcoded colours and generic components caused by agents assuming design decisions.
genesis-orchestrator
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agent-orchestrator
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api-contract
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blueprint-engine
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blueprint-first
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brand-ambassador
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claude-browser
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code-output-uplift
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verification-before-completion
Hard gate before any "Done", "Complete", or "✅" claim. Must execute verification commands and read actual output before claiming work is complete. Bans hedging language. Triggers before any completion statement, commit, PR creation, or success claim.
council-of-logic
>
cron-scheduler
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csv-processor
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dashboard-patterns
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data-validation
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data-visualisation-uplift
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definition-of-done-builder
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delegation-planner
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diagram-uplift
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dispatching-parallel-agents
Use when facing 2+ independent failures or tasks that can be worked on concurrently without shared state. Groups independent failures by component (frontend/backend/database), launches concurrent agents, integrates results, then runs full test suite. Triggers on multiple independent test failures, multi-component CI failures, or parallel feature work.
document-formatting-uplift
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email-template
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error-taxonomy
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evidence-verifier
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execution-guardian
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git-worktrees
Creates isolated git worktrees for feature development with automatic dependency installation, baseline test verification, and .gitignore safety checks. Extends the /minion isolation model with a formal worktree workflow. Triggers on "new feature", "isolate", "worktree", multi-session work, or when parallel development is needed.
health-check
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idea-to-production
Plain-English pipeline from idea to production — routes user requests to the right phase and agent
input-sanitisation
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metrics-collector
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model-currency-checker
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notebooklm-second-brain
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outcome-translator
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