histolab
Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.
hmdb-database
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
hypogenic
Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, or conducting systematic hypothesis exploration for research discovery in domains like deception detection, AI content detection, mental health analysis, or other empirical research tasks.
hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
it-operations
Manages IT infrastructure, monitoring, incident response, and service reliability. Provides frameworks for ITIL service management, observability strategies, automation, backup/recovery, capacity planning, and operational excellence practices.
iterate-pr
Iterate on a PR until CI passes. Use when you need to fix CI failures, address review feedback, or continuously push fixes until all checks are green. Automates the feedback-fix-push-wait cycle.
kegg-database
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
latchbio-integration
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
latex-posters
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
api-documentation
Auto-generate comprehensive API documentation with examples, schemas, and interactive tools.
writing-tests
Guidelines on writing tests for the backend
typography
Instructions on how to design high quality typography
making-commits
Guidelines on makign git commits
database-operations
Instructions on how to write database queries with SQLAlchemy.
css-colors
Instructions on how to add new colors for CSS rules
update-docs
ドキュメント更新スキル（仕様書、設計書、README等の更新）
setup-dev-env
開発環境セットアップスキル（依存関係インストール、DB初期化、環境変数設定）
review-architecture
アーキテクチャレビュースキル（設計整合性、コーディング規約、ドキュメント整合性の確認）
refactor-code
コードリファクタリングスキル（DRY原則適用、複雑度削減、パフォーマンス最適化、デグレーション防止）
qa-check
PR作成前の品質保証チェックを実行します。Lint、テスト、ビルド、カバレッジ確認を自動で行い、合格/不合格を判定します。フロントエンドのみ、バックエンドのみ、または両方のチェックが可能です。
pre-commit-check
コミット前品質チェックスキル（Lint、テスト、ビルドの高速検証）
guard-regression
デグレーション監視スキル（リファクタリング前後の品質比較、ロールバック判断）
generate-api-client
Orval APIクライアント生成スキル（OpenAPI仕様書から型安全なAPIクライアントを自動生成）
fix-bug
バグ修正統合スキル（原因調査→修正→テスト→レビュー→QA→PR作成の全工程自動化）
figma-to-tailwind
Figma MCPで取得したデザイン変数をTailwind CSS標準クラスに変換する。Figma MCPのコード生成後やデザイン実装時に自動起動。
develop-frontend
Next.js/Reactによるフロントエンド実装スキル（UI、API連携、状態管理、テスト）
develop-backend
Spring Boot/MyBatisによるバックエンド実装スキル - RESTful API設計、データベース設計（Flywayマイグレーション）、Controller/Service/Mapper層の実装、単体テスト作成を行います。DRY原則を徹底し、product.utilパッケージの既存実装やAOPによる自動ログ出力を活用します。未使用コード削除をIDE警告で確認し、./gradlew checkでLint/テスト/カバレッジ80%以上を保証します。サーバー起動による動作確認も必須です。
create-feature
新機能開発統合スキル - 要件分析からPR作成まで、新機能開発の全工程を自動化します。analyze-requirements、develop-backend、develop-frontend、review-architecture、qa-check、create-prの各専門スキルを適切な順序で呼び出し、完全な機能開発を実現します。品質基準（テストカバレッジ80%以上、Lint/ビルド成功）を満たすまで自動的にレビュー・修正を繰り返します。
check-migration
Flywayマイグレーションチェックスキル - マイグレーションファイルの検証、バージョン番号の競合チェック、命名規則チェック、SQL構文チェックを実施します。mainブランチとの競合確認も行い、マイグレーションの品質を保証します。
wp-test-analyzer
Analyze WordPress theme PHP files to extract testable elements for E2E test generation.
wp-orchestrator
Master WordPress project orchestrator - coordinates all WordPress skills for complete site setup, audit, and optimization. Use for new project setup, site audits, or comprehensive reviews. Runs interview phases and manages todo lists.
wp-docker
Docker-based WordPress development environment. Use when setting up new WordPress sites, managing Docker containers, or automating site deployment with WP-CLI.
wordpress-dev
WordPress development best practices - coding standards, custom post types, security, performance, hooks/filters, and template hierarchy. Use for any WordPress theme or plugin development guidance.
white-label
Complete WordPress white-labeling using FREE plugins only - ASE, Branda, White Label CMS, Admin Menu Editor. Covers login page branding, admin cleanup, security hardening, and client handoff preparation.
visual-qa
Complete visual QA - screenshots with full-page scroll to trigger animations, then analyze with Claude. Run after CSS/template changes.
siteground-cache
Bypass SiteGround caching (SG CachePress + LiteSpeed) for WordPress development. Adds cache-busting code to child themes for real-time development testing.
seo-optimizer
Audit and optimize WordPress SEO (Yoast/Rank Math) - checks focus keywords, meta descriptions, featured images. Uses Unsplash API for missing images. Run on all pages/posts to identify and fix SEO issues.
gsap-animations
GSAP animation best practices for web design - scroll triggers, performance optimization, accessibility, responsive animations, and testing integration. Use when implementing or reviewing animations on WordPress or any web project.
form-testing
Test WordPress form submissions and email delivery. Validates contact forms, checks WP Mail SMTP configuration, and sends test emails. Use when verifying form functionality or troubleshooting email delivery issues.
code-quality
Expert at TypeScript strict mode, linting, formatting, code review standards. Use when checking code quality, fixing type errors, or enforcing standards.
brand-guide
Generate and maintain brand style guides - colors, fonts, imagery, voice/tone, responsive specs. Use when documenting brand identity or creating style guide pages.
test-scaffolding
Generate test file scaffolds from source analysis with language-appropriate templates.
supabase-patterns
Generic Supabase best practices for Row Level Security, realtime subscriptions, storage, and edge functions. Framework-agnostic.
standards-extraction
Extract coding standards and conventions from CONTRIBUTING.md, .editorconfig, linter configs. Use for onboarding and ensuring consistent contributions.
stack-analyzer
Analyze project stack and recommend skills. Auto-detects frameworks, activates generic ai-dev-kit skills, and optionally scaffolds project-specific skills in the target repo.
spec-discovery
Parse specs to extract IDs, titles, and traceability metadata (repo, path, hash).
spawn
Skills for spawning external processes - AI coding agents and generic CLI commands in new terminal windows. Parent skill category for agent and terminal spawning.
spawn-terminal
Spawn a new terminal window to run CLI commands (ffmpeg, curl, python, etc.). Use for non-AI command execution.
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