Red Team Tools and Methodology
This skill should be used when the user asks to "follow red team methodology", "perform bug bounty hunting", "automate reconnaissance", "hunt for XSS vulnerabilities", "enumerate subdomains", or needs security researcher techniques and tool configurations from top bug bounty hunters.
Security Scanning Tools
This skill should be used when the user asks to "perform vulnerability scanning", "scan networks for open ports", "assess web application security", "scan wireless networks", "detect malware", "check cloud security", or "evaluate system compliance". It provides comprehensive guidance on security scanning tools and methodologies.
github-automation
Automate GitHub repositories, issues, pull requests, branches, CI/CD, and permissions via Rube MCP (Composio). Manage code workflows, review PRs, search code, and handle deployments programmatically.
hono
Build ultra-fast web APIs and full-stack apps with Hono — runs on Cloudflare Workers, Deno, Bun, Node.js, and any WinterCG-compatible runtime.
SQLMap Database Penetration Testing
This skill should be used when the user asks to "automate SQL injection testing," "enumerate database structure," "extract database credentials using sqlmap," "dump tables and columns from a vulnerable database," or "perform automated database penetration testing." It provides comprehensive guidance for using SQLMap to detect and exploit SQL injection vulnerabilities.
SSH Penetration Testing
This skill should be used when the user asks to "pentest SSH services", "enumerate SSH configurations", "brute force SSH credentials", "exploit SSH vulnerabilities", "perform SSH tunneling", or "audit SSH security". It provides comprehensive SSH penetration testing methodologies and techniques.
vulnerability-scanner
Advanced vulnerability analysis principles. OWASP 2025, Supply Chain Security, attack surface mapping, risk prioritization.
security-audit
Comprehensive security auditing workflow covering web application testing, API security, penetration testing, vulnerability scanning, and security hardening.
fastapi-endpoint
Plan and build production-ready FastAPI endpoints with async SQLAlchemy, Pydantic v2 models, dependency injection for auth, and pytest tests. Uses interview-driven planning to clarify data models, authentication method, pagination strategy, and caching before writing any code.
upstash-qstash
Upstash QStash expert for serverless message queues, scheduled jobs, and reliable HTTP-based task delivery without managing infrastructure. Use when: qstash, upstash queue, serverless cron, scheduled http, message queue serverless.
web-performance-optimization
Optimize website and web application performance including loading speed, Core Web Vitals, bundle size, caching strategies, and runtime performance
pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
polars
Fast DataFrame library (Apache Arrow). Select, filter, group_by, joins, lazy evaluation, CSV/Parquet I/O, expression API, for high-performance data analysis workflows.
opentargets-database
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
railway-docs
Fetch up-to-date Railway documentation to answer questions accurately. Use when user asks about Railway features, how Railway works, or shares a docs.railway.com URL.
railway-status
Check current Railway project status for this directory. Use when user asks "railway status", "is it running", "what's deployed", "deployment status", or about uptime. NOT for variables or configuration queries - use railway-environment skill for those.
adaptyv
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
railway-service
Check service status, rename services, change service icons, link services, or create services with Docker images. For creating services with local code, prefer railway-new skill. For GitHub repo sources, use railway-new skill to create empty service then railway-environment skill to configure source.
aeon
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
pymc-bayesian-modeling
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
Writing Hookify Rules
This skill should be used when the user asks to "create a hookify rule", "write a hook rule", "configure hookify", "add a hookify rule", or needs guidance on hookify rule syntax and patterns.
railway-database
Add official Railway database services (Postgres, Redis, MySQL, MongoDB). Use when user wants to add a database, says "add postgres", "add redis", "add database", "connect to database", or "wire up the database". For other templates (Ghost, Strapi, n8n), use the railway-templates skill.
arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
railway-deploy
Deploy code to Railway using "railway up". Use when user wants to push code, says "railway up", "deploy", "ship", or "push". For initial setup or creating services, use railway-new skill. For Docker images, use railway-environment skill.
pufferlib
This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom environment development, vectorized parallel simulation, multi-agent systems, or integration with existing RL environments (Gymnasium, PettingZoo, Atari, Procgen, etc.). Use this skill for implementing PPO training, creating PufferEnv environments, optimizing RL performance, or developing policies with CNNs/LSTMs.
pyhealth
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).
pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
openalex-database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
neurokit2
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.
opentrons-integration
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.
benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
paper-2-web
This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
railway-new
Create Railway projects, services, and databases with proper configuration. Use when user says "setup", "deploy to railway", "initialize", "create project", "create service", or wants to deploy from GitHub. Handles initial setup AND adding services to existing projects. For databases, use railway-railway-database skill instead.
railway-templates
Search and deploy services from Railway's template marketplace. Use when user wants to add a service from a template, find templates for a specific use case, or deploy tools like Ghost, Strapi, n8n, Minio, Uptime Kuma, etc. For databases (Postgres, Redis, MySQL, MongoDB), prefer the railway-database skill.
pathml
Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.
alphafold-database
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
dask
Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing, task graphs, for larger-than-RAM datasets and parallel workflows.
railway-projects
List, switch, and configure Railway projects. Use when user wants to list all projects, switch projects, rename a project, enable/disable PR deploys, make a project public/private, or modify project settings.
neuropixels-analysis
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
think-tank
Run a Virtual Think Tank — a structured multi-persona debate — before planning or making architectural/design/strategic decisions. Use this skill whenever the user is about to plan a system, make a technology choice, evaluate trade-offs, decide on an approach, or faces any decision where multiple perspectives would sharpen the outcome. Also trigger when the user says "think tank", "debate this", "perspectives on", "trade-offs", "should I use X or Y", "help me decide", "before we plan", or asks for pros/cons of competing approaches. This skill should run BEFORE any implementation planning begins — it produces a structured analysis that feeds into better plans.
skill-developer
Create and manage Claude Code skills following Anthropic best practices. Use when creating new skills, modifying skill-rules.json, understanding trigger patterns, working with hooks, debugging skill activation, or implementing progressive disclosure. Covers skill structure, YAML frontmatter, trigger types (keywords, intent patterns, file paths, content patterns), enforcement levels (block, suggest, warn), hook mechanisms (UserPromptSubmit, PreToolUse), session tracking, and the 500-line rule.
pdb-database
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
railway-environment
Query, stage, and apply configuration changes for Railway environments. Use for ANY variable or env var operations, service configuration (source, build settings, deploy settings), lifecycle (delete service), and applying changes. Prefer over railway-status skill for any configuration or variable queries.
peer-review
Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.
railway-metrics
Query resource usage metrics for Railway services. Use when user asks about resource usage, CPU, memory, network, disk, or service performance like "how much memory is my service using" or "is my service slow".
ship-learn-next
Transform learning content (like YouTube transcripts, articles, tutorials) into actionable implementation plans using the Ship-Learn-Next framework. Use when user wants to turn advice, lessons, or educational content into concrete action steps, reps, or a learning quest.
raffle-winner-picker
Picks random winners from lists, spreadsheets, or Google Sheets for giveaways, raffles, and contests. Ensures fair, unbiased selection with transparency.
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