ios-expert
iOS development expert including SwiftUI, UIKit, and Apple frameworks
iso-13485-certification
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2) creating Quality Manuals, (3) developing required procedures and work instructions, (4) preparing Medical Device Files, (5) understanding ISO 13485 requirements, or (6) identifying missing documentation for medical device certification. Also use when users mention medical device regulations, QMS certification, FDA QMSR, EU MDR, or need help with quality system documentation.
java-expert
Java and Spring Boot expert including REST APIs, JPA, and microservices
jira-pm
Jira project management and issue tracking integration
judge-verification
Independent LLM judge evaluates task completion separately from the executing agent, catching false success claims by reviewing task goal, actions taken, final state, and evidence. Produces PASS/FAIL with confidence score and reasoning.
jupyter-notebook-best-practices
Guidelines for structuring and documenting Jupyter notebooks for reproducibility and clarity.
k8s-manifest-generator
Create production-ready Kubernetes manifests for Deployments, Services, ConfigMaps, and Secrets following best practices and security standards. Use when generating Kubernetes YAML manifests, creating K8s resources, or implementing production-grade Kubernetes configurations.
k8s-security-policies
Implement Kubernetes security policies including NetworkPolicy, PodSecurityPolicy, and RBAC for production-grade security. Use when securing Kubernetes clusters, implementing network isolation, or enforcing pod security standards.
kafka-development-practices
Applies general coding standards and best practices for Kafka development with Scala.
kegg-database
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
knowledge-graph
Entity and relation tracking skill using MCP memory server patterns and local knowledge graph storage. Build persistent knowledge graphs of entities, relationships, and observations across agent sessions. Covers the MCP memory server (@modelcontextprotocol/server-memory), local JSON-based graphs, and entity-relation querying patterns for long-running agents.
kubernetes-flux
Kubernetes cluster management and troubleshooting. Query pods, deployments, services, logs, and events. Supports context switching, scaling, and rollout management. Use for Kubernetes debugging, monitoring, and operations.
labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
large-data-with-dask
Specific optimization strategies for Python scripts working with larger-than-memory datasets via Dask.
latchbio-integration
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
latex-posters
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
linear-pm
Linear project management - issues, projects, cycles, and roadmaps. Use for Linear-related tasks like managing issues, tracking sprints, and organizing projects.
literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
llm-council
Orchestrate multi-LLM parallel debate and synthesis. Dispatches prompts to available omega CLI wrappers in parallel, collects independent responses, runs anonymized peer review ranking, and synthesizes via a chairman model. Supports collaboration templates, idle watchdog, inter-agent messaging, worktree isolation, and multi-turn sessions. No server required.
logging-module-usage
Employs the logging module judiciously to log important events, warnings, and errors.
lsp-navigator
Compiler-level code intelligence via native LSP — definitions, references, types, call hierarchies, and diagnostics.
marketing-content
Content strategy, copywriting frameworks (AIDA/PAS/BAB/4Ps/FAB), editorial calendar management, platform-specific content, A/B testing, campaign planning, audience targeting, and content performance measurement.
market-research-reports
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
markitdown
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
markitdown-converter
Convert files to Markdown using Microsoft's MarkItDown library
matchms
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms.
matlab
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when the user needs help with MATLAB syntax, functions, or wants to convert between MATLAB and Python code. Scripts can be executed with MATLAB or the open-source GNU Octave interpreter.
matplotlib
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.
medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
medusa
Medusa v2 rules and best practices for modular commerce architecture, Workflow SDK, data models, services, and admin customizations.
medusa-security
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memory-audit
Comprehensive health check across CC auto-memory and agent-studio memory systems — detects orphans, duplicates, staleness, and threshold violations
memory-forensics
Master memory forensics techniques including memory acquisition, process analysis, and artifact extraction using Volatility and related tools. Use when analyzing memory dumps, investigating incidents, or performing malware analysis from RAM captures.
memory-quality-auditor
Audit memory retrieval quality (drift, staleness, citation-groundedness) and produce remediation backlog.
memory-search
Semantic search over global agent memory. Use to retrieve previously learned patterns, decisions, gotchas, and workarounds. Prevents stale-context errors across long sessions and multi-agent pipelines.
metabolomics-workbench-database
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
ml-experiment-loop
Autonomous fixed-budget ML experiment loop — setup, iterative hypothesis testing, git-based keep/discard tracking, and indefinite autonomous execution. Implements the karpathy/autoresearch protocol.
mobile-first-design-rules
Focuses on rules and best practices for mobile-first design and responsive typography using tailwind.
mobile-ui-development-rule
General rules pertaining to Mobile UI development. Covers UI/UX best practices, state management, and navigation patterns.
modal
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.
modern-python
Modern Python tooling best practices using uv, ruff, ty, and pytest. Mandates the Trail of Bits Python coding standards for project setup, dependency management, linting, type checking, and testing. Based on patterns from trailofbits/cookiecutter-python.
molfeat
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
monorepo-and-tooling
Outlines the monorepo structure and tooling conventions, emphasizing the use of Taskfile.yml, and proper handling of environment variables.
multi-agent-architecture-reference
Decision matrix for selecting multi-agent topologies (Supervisor, Swarm, Hierarchical, Conductor) with token economics, failure modes, and escalation paths
nativescript
NativeScript best practices and patterns for mobile applications
nativewind-and-tailwind-css-compatibility
Provides specific version compatibility notes for NativeWind and Tailwind CSS to prevent common installation errors.
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
neurokit2
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.
neuropixels-analysis
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
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