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jackspace

jackspace

516 Skills published on GitHub.

zinc-database

Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.

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benchling-integration

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

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devops

Deploy and manage cloud infrastructure on Cloudflare (Workers, R2, D1, KV, Pages, Durable Objects, Browser Rendering), Docker containers, and Google Cloud Platform (Compute Engine, GKE, Cloud Run, App Engine, Cloud Storage). Use when deploying serverless functions to the edge, configuring edge computing solutions, managing Docker containers and images, setting up CI/CD pipelines, optimizing cloud infrastructure costs, implementing global caching strategies, working with cloud databases, or building cloud-native applications.

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dispatching-parallel-agents

Use when facing 3+ independent failures that can be investigated without shared state or dependencies - dispatches multiple Claude agents to investigate and fix independent problems concurrently

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dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

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docker-helper

Expert helper for Docker containers, Docker Compose, and container optimization

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omero-integration

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

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docs-seeker

Searching internet for technical documentation using llms.txt standard, GitHub repositories via Repomix, and parallel exploration. Use when user needs: (1) Latest documentation for libraries/frameworks, (2) Documentation in llms.txt format, (3) GitHub repository analysis, (4) Documentation without direct llms.txt support, (5) Multiple documentation sources in parallel

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drizzle-orm-d1

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elevenlabs-agents

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error-debugger

Analyzes errors, searches past solutions in memory, provides immediate fixes with code examples, and saves solutions for future reference. Use when user says "debug this", "fix this error", "why is this failing", or when error messages appear like TypeError, ECONNREFUSED, CORS, 404, 500, etc.

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anndata

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.

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arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

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error-tracking

Add Sentry v8 error tracking and performance monitoring to your project services. Use this skill when adding error handling, creating new controllers, instrumenting cron jobs, or tracking database performance. ALL ERRORS MUST BE CAPTURED TO SENTRY - no exceptions.

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astropy

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

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executing-plans

Use when partner provides a complete implementation plan to execute in controlled batches with review checkpoints - loads plan, reviews critically, executes tasks in batches, reports for review between batches

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fastmcp

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finishing-a-development-branch

Use when implementation is complete, all tests pass, and you need to decide how to integrate the work - guides completion of development work by presenting structured options for merge, PR, or cleanup

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biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.

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firecrawl-scraper

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Fluxwing Component Creator

Create uxscii components with ASCII art and structured metadata when user wants to create, build, or design UI components. Use when working with .uxm files, when user mentions .uxm components, or when creating buttons, inputs, cards, forms, modals, or navigation.

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Fluxwing Component Expander

Add interaction states like hover, focus, disabled, active, error to existing uxscii components. Use when working with .uxm files, when user wants to expand, enhance, or add states to .uxm components.

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Fluxwing Component Viewer

View detailed information about a specific uxscii component including metadata, states, props, and ASCII preview. Use when working with .uxm files, when user wants to see, view, inspect, or get details about a .uxm component.

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Fluxwing Enhancer

Enhance uxscii components from sketch to production fidelity. Use when working with .uxm files marked as "fidelity: sketch" or when user wants to add detail and polish to components.

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Fluxwing Library Browser

Browse and view all available uxscii components including bundled templates, user components, and screens. Use when working with .uxm files, when user wants to see, list, browse, or search .uxm components or screens.

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Fluxwing Screen Scaffolder

Build complete UI screens by composing multiple uxscii components. Use when working with .uxm files, when user wants to create, scaffold, or build .uxm screens like login, dashboard, profile, settings, or checkout pages.

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Fluxwing Screenshot Importer

Import UI screenshots and generate uxscii components automatically using vision analysis. Use when user wants to import, convert, or generate .uxm components from screenshots or images.

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biopython

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

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bioservices

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

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frontend-dev-guidelines

Frontend development guidelines for React/TypeScript applications. Modern patterns including Suspense, lazy loading, useSuspenseQuery, file organization with features directory, MUI v7 styling, TanStack Router, performance optimization, and TypeScript best practices. Use when creating components, pages, features, fetching data, styling, routing, or working with frontend code.

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cellxgene-census

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

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git-workflow-helper

Expert guidance for Git workflows, troubleshooting, and best practices

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github-auth

Securely authenticate with GitHub using stored credentials for API operations and git commands

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github-project-automation

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google-adk-python_mrgoonie

Build AI agents with Google's Agent Development Kit (ADK) for Python. Use when creating tool-using or multi-agent systems, wiring sequential, parallel or loop workflow agents, integrating Google Search or code execution, evaluating agent performance, or deploying to Vertex AI Agent Engine or Cloud Run.

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google-gemini-api

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google-gemini-embeddings

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hono-routing

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hugo

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infrastructure-skill-builder

Transform infrastructure documentation, runbooks, and operational knowledge into reusable Claude Code skills. Convert Proxmox configs, Docker setups, Kubernetes deployments, and cloud infrastructure patterns into structured, actionable skills.

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json-config-helper

Validate, format, and work with JSON configuration files

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mcp-builder

Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or services, whether in Python (FastMCP) or Node/TypeScript (MCP SDK).

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media-processing

Process multimedia files with FFmpeg (video/audio encoding, conversion, streaming, filtering, hardware acceleration) and ImageMagick (image manipulation, format conversion, batch processing, effects, composition). Use when converting media formats, encoding videos with specific codecs (H.264, H.265, VP9), resizing/cropping images, extracting audio from video, applying filters and effects, optimizing file sizes, creating streaming manifests (HLS/DASH), generating thumbnails, batch processing images, creating composite images, or implementing media processing pipelines. Supports 100+ formats, hardware acceleration (NVENC, QSV), and complex filtergraphs.

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motion

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Multi-AI Consultant

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multi-repository-orchestrator

Coordinate development workflows across multiple Git repositories with synchronized branching, batch commits, cross-repo operations, and monorepo-like workflows for microservices and multi-package projects.

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neon-vercel-postgres

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network-diagnostics

Automated network troubleshooting and diagnostics for WSL/Linux environments

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open-source-contributions

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openai-agents

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