alife2025
ALIFE 2025 Proceedings - 337 pages, 80+ papers on artificial life, evolution, emergence, cellular automata, neural networks, agent-based models. Full Mathpix extraction with equations and figures.
alphafold-database
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
amazon-shopping-mcp
Amazon product search, cart management, price tracking, and shopping list via Playwright + DuckDB MCP server
amp-continue
Export AMP threads as markdown and fork continuation paths. Use when managing AMP conversation threads, exporting thread history, or branching thread execution across skills.
amp-continue: Thread-based conversation continuation with GF(3) branching
Combines AMP thread export with GF(3)-classified continuation for skill orchestration. Export threads as markdown, classify continuation choices as {-1:reductive, 0:neutral, +1:generative}, and fork parallel execution paths.
analytics-tracking
When the user wants to set up, improve, or audit analytics tracking and measurement. Also use when the user mentions "set up tracking," "GA4," "Google Analytics," "conversion tracking," "event tracking," "UTM parameters," "tag manager," "GTM," "analytics implementation," or "tracking plan." For A/B test measurement, see ab-test-setup.
anna-archive
Anna's Archive integration for academic paper and book retrieval. Search shadow libraries (Library Genesis, Z-Library, Sci-Hub) via unified API with GF(3) balanced caching.
anndata
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
aptos-ecosystem
Skill aptos-ecosystem
aptos-society
Aptos Society Scale
ar-vr-xr
Reality tech (AR/VR/XR). Build and ship spatial experiences (WebXR/OpenXR/Unity/Unreal) with strong defaults for interaction, performance, comfort, privacy, and deployment.
ar
Augmented reality (AR) reality tech. Passthrough overlays, hit-test/anchors, occlusion, lighting, camera permissions, and safety.
cats-focus-monad
Cats Focus + Monad: Lawful composition for effect management
arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
asi-skill-selector
Plurigrid ASI CLI for GF(3)-balanced skill selection and dispatch
assets
Assets skill
astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
audit-orchestrator
Audit Orchestrator
aws-architecture-design
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aws-sso-auth-guide
AWS SSO discovery, configuration, and terminal usage
azure-devops
Interact with Azure DevOps repositories, pull requests, and APIs using the AZURE_DEVOPS_TOKEN environment variable. Use when working with code hosted on Azure DevOps or managing Azure DevOps resources.
b
World B Skill
b01bab
Gay MCP skill at invocation 2
b42fb4
Gay MCP skill at invocation 19
bci-colored-operad
Brain-Computer Interface with colored operad security boundaries. Maximally isolated EEG/neural data processing via VM→Container→Process enclosure with GF(3) conservation for Agent-O-Rama neural pathways.
beacon-repeater
MLX↔JAX bidirectional beacon-repeater with spectral gap random walk,
beads-issue-tracker
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beeper-mcp
Unified messaging via Beeper Desktop MCP. Search chats, send messages, manage conversations across all networks (iMessage, WhatsApp, Signal, Telegram, Discord, Slack, etc.)
belief-revision-log
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benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
benchmark
Run and interpret engine-stack benchmarks (Steel, ember, shale)
bidirectional-navigator
Safe proof ↔ theorem navigation with non-backtracking constraint.
bifunctor-bridge
Bifunctors: two-argument functors for product categories.
bigquery-asi-interleave
Interleave layer bridging the BigQuery cluster to plurigrid/asi. Routes BigQuery queries through asi's DuckDB stack, wires patent search into asi knowledge graph, connects Looker Studio dashboards to CatColab, and feeds BigQuery ML into the lolita physics emulation pipeline.
biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
bisimulation-oracle
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bitbucket
Interact with Bitbucket repositories and pull requests using the BITBUCKET_TOKEN environment variable. Use when working with code hosted on Bitbucket or managing Bitbucket resources via API.
bivector-forum
Community knowledge from bivector.net - GA tutorials, discussions, and best practices
bmorphism-ies-env
Documentation and orchestration for the bmorphism/ies flox environment toolkit
bmorphism-video-interleave
bmorphism Video Archive Interleave
cc-trace
Interactive assistant for intercepting, debugging, analyzing and reviewing Claude Code API requests using mitmproxy. Guides setup, certificate configuration, and active traffic inspection via web or CLI interface. Supports learning Claude Code internals, debugging issues, and optimizing API usage.
botnet-disruption
Coordinated botnet takedown methodologies — sinkholing, infrastructure mapping, legal frameworks, BGP intervention, and post-disruption analysis. Studies Operation Endgame, Badbox 2.0, and emerging blockchain C2 countermeasures. Defensive disruption for authorized law enforcement, CERT, and academic research contexts.
botnet-studies
Botnet architecture taxonomy, detection techniques, and defensive analysis. Covers C2 topologies, DGA analysis, fast-flux detection, P2P overlay mapping, blockchain C2, and ML-based traffic fingerprinting. Defensive research for understanding and countering distributed malicious infrastructure.
braindance-validator
Validates GF(3) conservation across triadic braindance replays. Ensures MINUS+ERGODIC+PLUS=0.
brenda-database
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
browser-navigation
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c
World C Skill
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