dd3c3c
'Worldmat TiDAR: 3×3×3 matrix of diffusion draft + AR verify executions
debug-buttercup
>
deep-debug
>
deepchem
Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.
deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
denario
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.
derham-cohomology
Differential forms on signal manifolds with exterior algebra, Hodge star, and de Rham complex
derived-categories
Homological algebra via chain complexes, derived functors (Tor/Ext), triangulated categories, and spectral sequences
deutsch-koordinator
Koordinator für Deutsch-Englisch Übersetzung mit GF(3) Routing
devcontainer-setup
Creates devcontainers with Claude Code, language-specific tooling (Python/Node/Rust/Go), and persistent volumes. Use when adding devcontainer support to a project, setting up isolated development environments, or configuring sandboxed Claude Code workspaces.
develop-web-game
Use when Codex is building or iterating on a web game (HTML/JS) and needs a reliable development + testing loop: implement small changes, run a Playwright-based test script with short input bursts and intentional pauses, inspect screenshots/text, and review console errors with render_game_to_text.
dfc070
Gay MCP skill at invocation 10
did-passport-interleave
Formal bridge between W3C Decentralized Identifiers (did:wba, ANP) and passport.gay (SplitMix64 MAC→trit trajectory→GF(3) fingerprint→QRTP air-gap). Establishes a bisimulation relation between the online DID resolution model and the offline fountain-coded QR identity model. Closes Gap G-P2 (MCP-I DID extension) and Gap G5 (passport revocation) from the zig-syrup propagator interleave gap registry.
diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
discopy-functor
Monoidal functor evaluation for string diagrams. DisCoPy functors map
distributive-law
Distributive laws: monad/comonad composition.
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
doc
Use when the task involves reading, creating, or editing `.docx` documents, especially when formatting or layout fidelity matters; prefer `python-docx` plus the bundled `scripts/render_docx.py` for visual checks.
docker
Run Docker commands within a container environment, including starting the Docker daemon and managing containers. Use when building, running, or managing Docker containers and images.
dockerization
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documentation-rulebook
Standard deployment procedures for production
drugbank-database
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.
ducklake-categorical-model
Categorical modeling for DuckLake with ACSet schemas
ducklake-meta-cognitive
Meta-cognitive analysis patterns for DuckLake temporal introspection
ducklake-pattern-expansion
Pattern expansion and schema evolution for DuckLake databases
ducklake-semantic-analyzer
Semantic analysis for DuckLake ACSet models with GF(3) conservation
ducklake-temporal-introspection
Time-travel queries and temporal versioning for DuckLake
ducklake
Create, query, migrate, and maintain DuckLake lakehouse databases using the DuckDB ducklake extension. Use when working with DuckLake catalogs, time travel queries, snapshots, schema evolution, cross-lake federation, or migrating plain DuckDB files to DuckLake format.
e
World E Skill
e2b665
Gay MCP skill at invocation 8
e2b72d
Gay MCP skill at invocation 24
e68fe0
Gay MCP skill at invocation 21
ecosystem-guide
Guide to spences10's Claude Code ecosystem. Use when user asks which tool to use, how tools relate, or needs help choosing between MCP servers, skills, or CLIs.
ee5cbb
Gay MCP skill at invocation 20
egpu
External GPU technology fundamentals, Thunderbolt bandwidth math, hotplug detection, workload migration, and Basin's eGPU infrastructure (basin-display, basin-gpu). Use when working with eGPU detection, GPU failover, Thunderbolt networking, or multi-GPU workload routing.
eleuther-mlx
Eleuther Mlx
elevenlabs-acset
Skill elevenlabs-acset
elicit-prediction-market
Interface with the live Basin prediction market at elicit.attic.codes. Place bets, check positions, preview trades, monitor markets.
emacspeak-binaural
Replace emacspeak auditory icons with binaural beats using the sound theme system. Load when customizing emacspeak sounds, creating new sound themes, or working with binaural audio on macOS with SwiftMac TTS.
embedded-medical-device
Firmware development for STM32, nRF52840, and RP2040 medical devices with BLE/USB communication, IEEE 11073 protocols, and secure data handling. When building point-of-care devices (pulse oximeters, BP monitors, glucose meters), embedded gateways, or medical IoT endpoints with TinyGo.
emergent-role-assignment
**Category:** Phase 3 Core - Self-Organization
ena-database
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
end-coend
Ends and Coends: universal (co)wedges.
ensembl-database
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
esm
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
etetoolkit
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
example-skill
This skill should be used when the user asks to "demonstrate skills", "show skill format", "create a skill template", or discusses skill development patterns. Provides a reference template for creating Claude Code plugin skills.
exopriors-scry
SQL and vector search over 3B+ docs (arXiv, HN, LessWrong, EA Forum, Bluesky, Reddit). Triggers: exopriors, scry, research corpus, semantic search, arxiv search, vector search.
exploratory-data-analysis
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
exponential-topology-communication
**Category:** Phase 3 Core - Scalable Communication
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