skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Claude's capabilities with specialized knowledge, workflows, or tool integrations.
frontend-design
Create distinctive, production-grade frontend interfaces with high design quality. Use this skill when the user asks to build web components, pages, artifacts, posters, or applications (examples include websites, landing pages, dashboards, React components, HTML/CSS layouts, or when styling/beautifying any web UI). Generates creative, polished code and UI design that avoids generic AI aesthetics.
cloudflare-workers
Build stateful serverless applications using Cloudflare Workers and Durable Objects. Use when creating real-time collaborative apps, chat systems, multiplayer games, WebSocket servers, rate limiters, or any application requiring coordination between clients, persistent state, or scheduled tasks with Cloudflare's edge computing platform.
ai-sdk-v6
Guide for building AI-powered applications using the Vercel AI SDK v6. Use when developing with generateText, streamText, useChat, tool calling, agents, structured output generation, MCP integration, or any LLM-powered features in TypeScript/JavaScript applications. Covers React, Next.js, Vue, Svelte, and Node.js implementations.
add-review-comment
Add a review comment to a GitHub pull request.
fetch-diff
Fetch PR diff with filtering and line numbers for code review.
copilot
Hand off a task to GitHub Copilot.
analyze-ci
Analyze failed GitHub Action jobs for a pull request.
ui-review
Review a GitHub PR's UI/UX changes by launching the MLflow web app, driving a headless agent-browser over the changed surfaces, and writing a Markdown UI-review comment body (findings + screenshots) for the workflow to post.
pr-review
Review a GitHub pull request and emit a validated local review payload (comments + approval decision)
skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.
skill-installer
Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos).
plugin-creator
Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, valid manifest defaults, and personal-marketplace entries by default. Use when Codex needs to create a new personal plugin, add optional plugin structure, generate or update marketplace entries for plugin ordering and availability metadata, or update an existing local plugin during development with the CLI-driven cachebuster and reinstall flow.
imagegen
Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when Codex should create a brand-new image, transform an existing image, or derive visual variants from references, and the output should be a bitmap asset rather than repo-native code or vector. Do not use when the task is better handled by editing existing SVG/vector/code-native assets, extending an established icon or logo system, or building the visual directly in HTML/CSS/canvas.
codex-pr-body
Update the title and body of one or more pull requests.
update-v8-version
Update Codex's pinned `v8` / `rusty_v8` versions, validate the release-candidate path, and investigate failed V8 canary or artifact builds. Use when asked to bump V8, update `rusty_v8` artifacts, prepare or validate a V8 release candidate, check `v8-canary`, or diagnose why a V8 version update no longer builds.
test-tui
Guide for testing Codex TUI interactively
codex-issue-digest
Run a GitHub issue digest for openai/codex by feature-area labels, all areas, and configurable time windows. Use when asked to summarize recent Codex bug reports or enhancement requests, especially for owner-specific labels such as tui, exec, app, or similar areas.
codex-bug
Diagnose GitHub bug reports in openai/codex. Use when given a GitHub issue URL from openai/codex and asked to decide next steps such as verifying against the repo, requesting more info, or explaining why it is not a bug; follow any additional user-provided instructions.
code-review
Run a final code review on a pull request
code-review-testing
Test authoring guidance
code-review-context
Model visible context
code-review-change-size
Change size guidance (800 lines)
code-breaking-changes
Breaking changes
path-types
Choose Rust types for operating system paths across the Codex repository. Use when defining new path-bearing types or explicitly migrating existing ones.
babysit-pr
Babysit a GitHub pull request after creation by continuously polling review comments, CI checks/workflow runs, and mergeability state until the PR is merged/closed or user help is required. Diagnose failures, retry likely flaky failures up to 3 times, auto-fix/push branch-related issues when appropriate, and keep watching open PRs so fresh review feedback is surfaced promptly. Use when the user asks Codex to monitor a PR, watch CI, handle review comments, or keep an eye on failures and feedback on an open PR.
openai-docs
Use when the user asks how to build with OpenAI products or APIs, asks about Codex itself or choosing Codex surfaces, needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; use OpenAI docs MCP tools for non-Codex docs questions, use the Codex manual helper first for broad Codex self-knowledge, and restrict fallback browsing to official OpenAI domains.
pushing-ci-changes
Pushing GitHub Actions changes, resolving push rejection, requesting upload exceptions.
remote-tests
Testing against remote executors in integration tests.
select-svg-icon
Choose and validate SVG icons for pyRevit extension commands. Use when creating or updating a pyRevit pushbutton and you need an SVG-only icon workflow with automated acquisition from svgrepo.com first, manual fallback on svgfind.com, and vision-based semantic ranking before finalizing icon assets.
pyrevit-revit-2024
Revit 2024 API guidance for pyRevit development. Use when implementing or reviewing pyRevit commands that target Autodesk Revit 2024, including transaction patterns, API constraints, and version-specific best practices.
pyrevit-revit-2023
Revit 2023 API guidance for pyRevit development. Use when implementing or reviewing pyRevit commands that target Autodesk Revit 2023, including transaction patterns, API constraints, and version-specific best practices.
develop-pyrevit-extensions
Build, plan, review, and document pyRevit extensions. Use when Codex needs the pyRevit development workflow, templates, prompts, checklists, or scripts for creating or updating pyRevit commands in this repo. Pair with a version-specific Revit skill (e.g., 2023/2024/2025) for API constraints.
pyrevit-revit-2025
Revit 2025 API guidance for pyRevit development. Use when implementing or reviewing pyRevit commands that target Autodesk Revit 2025, including transaction patterns, API constraints, and version-specific best practices.
protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
pptx
Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates, layouts, speaker notes, or comments. Trigger whenever the user mentions \"deck,\" \"slides,\" \"presentation,\" or references a .pptx filename, regardless of what they plan to do with the content afterward. If a .pptx file needs to be opened, created, or touched, use this skill.
pptx-posters
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
datamol
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
deepchem
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For graph-first PyTorch workflows use torchdrug; for benchmark datasets use pytdc.
deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
diffdock
DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus SMILES/SDF/MOL2, batch docking, virtual screening, and pose-confidence interpretation. Not for binding affinity prediction.
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
etetoolkit
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
exploratory-data-analysis
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
flowio
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
generate-image
Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that is not a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.
geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
geopandas
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
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