aws-architecture-design
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aws-sso-auth-guide
AWS SSO discovery, configuration, and terminal usage
azure-devops
Interact with Azure DevOps repositories, pull requests, and APIs using the AZURE_DEVOPS_TOKEN environment variable. Use when working with code hosted on Azure DevOps or managing Azure DevOps resources.
b
World B Skill
b01bab
Gay MCP skill at invocation 2
b42fb4
Gay MCP skill at invocation 19
bci-colored-operad
Brain-Computer Interface with colored operad security boundaries. Maximally isolated EEG/neural data processing via VM→Container→Process enclosure with GF(3) conservation for Agent-O-Rama neural pathways.
beacon-repeater
MLX↔JAX bidirectional beacon-repeater with spectral gap random walk,
beads-issue-tracker
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beeper-mcp
Unified messaging via Beeper Desktop MCP. Search chats, send messages, manage conversations across all networks (iMessage, WhatsApp, Signal, Telegram, Discord, Slack, etc.)
belief-revision-log
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benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
benchmark
Run and interpret engine-stack benchmarks (Steel, ember, shale)
bidirectional-navigator
Safe proof ↔ theorem navigation with non-backtracking constraint.
bifunctor-bridge
Bifunctors: two-argument functors for product categories.
bigquery-asi-interleave
Interleave layer bridging the BigQuery cluster to plurigrid/asi. Routes BigQuery queries through asi's DuckDB stack, wires patent search into asi knowledge graph, connects Looker Studio dashboards to CatColab, and feeds BigQuery ML into the lolita physics emulation pipeline.
biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
bisimulation-oracle
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bitbucket
Interact with Bitbucket repositories and pull requests using the BITBUCKET_TOKEN environment variable. Use when working with code hosted on Bitbucket or managing Bitbucket resources via API.
bivector-forum
Community knowledge from bivector.net - GA tutorials, discussions, and best practices
bmorphism-ies-env
Documentation and orchestration for the bmorphism/ies flox environment toolkit
bmorphism-video-interleave
bmorphism Video Archive Interleave
cc-trace
Interactive assistant for intercepting, debugging, analyzing and reviewing Claude Code API requests using mitmproxy. Guides setup, certificate configuration, and active traffic inspection via web or CLI interface. Supports learning Claude Code internals, debugging issues, and optimizing API usage.
botnet-disruption
Coordinated botnet takedown methodologies — sinkholing, infrastructure mapping, legal frameworks, BGP intervention, and post-disruption analysis. Studies Operation Endgame, Badbox 2.0, and emerging blockchain C2 countermeasures. Defensive disruption for authorized law enforcement, CERT, and academic research contexts.
botnet-studies
Botnet architecture taxonomy, detection techniques, and defensive analysis. Covers C2 topologies, DGA analysis, fast-flux detection, P2P overlay mapping, blockchain C2, and ML-based traffic fingerprinting. Defensive research for understanding and countering distributed malicious infrastructure.
braindance-validator
Validates GF(3) conservation across triadic braindance replays. Ensures MINUS+ERGODIC+PLUS=0.
brenda-database
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
browser-navigation
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c
World C Skill
cat-tripartite
'Category Theory Tripartite: SICP generic dispatch, CTP Racket categories,
catalyst-chemical
Chemical reaction network modeling with Catalyst.jl. Autopoietic systems,
categorical-composition
**Category:** Phase 3 Core - Compositional Architecture
catlab-asi-interleave
Bridge layer connecting AlgebraicJulia/Catlab.jl to plurigrid/asi. Wires ACSets (attributed C-sets), wiring diagrams, decorated cospans, and the AlgebraicJulia ecosystem (AlgebraicDynamics, AlgebraicPetri, AlgebraicRewriting, Decapodes) into the ASI skill graph. ACSets generalize relational databases with categorical semantics; every diagram, network, and model in the ecosystem is an ACSet.
catp
Category-theoretic pipes with GF(3) flow balance checking. Validates
cellxgene-census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
cgx-acquisition-re
Reverse engineer CGX Cognionics Quick-20 EEG acquisition protocol using MCP RE tooling (Binary Ninja, Ghidra, radare2)
chembl-database
Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
chemical-abstract-machine
Berry & Boudol''s CHAM: computation as chemical reactions on multisets.
chemical-organization-theory
**Category:** Phase 3 Core - Autopoietic Systems
cirq
Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when working with quantum algorithms, quantum circuit design, quantum simulation (noiseless or noisy), running on quantum hardware (Google, IonQ, AQT, Pasqal), circuit optimization and compilation, noise modeling and characterization, or quantum experiments and benchmarking (VQE, QAOA, QPE, randomized benchmarking).
citation-management
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
claude-in-chrome-troubleshooting
Diagnose and fix Claude in Chrome MCP extension connectivity issues. Use when mcp__claude-in-chrome__* tools fail, return "Browser extension is not connected", or behave erratically.
claude-opus-4-5-migration
Migrate prompts and code from Claude Sonnet 4.0, Sonnet 4.5, or Opus 4.1 to Opus 4.5. Use when the user wants to update their codebase, prompts, or API calls to use Opus 4.5. Handles model string updates and prompt adjustments for known Opus 4.5 behavioral differences. Does NOT migrate Haiku 4.5.
claude-questions-leaderboard
Track Claude's best and worst questions in DuckDB. Use when Claude asks a notably good or bad question, or to review question quality. Triggers: leaderboard, bad question, good question, question quality.
clifford-acset-bridge
Bridge between Clifford Algebras (ganja.js/Grassmann.jl) and ACSets with grade-preserving morphisms
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
clinical-reports
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
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