torchdrug
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosynthesis, GNNs (GIN, GAT, SchNet), 40+ datasets, for PyTorch-based ML on molecules, proteins, and biomedical graphs.
transformers
This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answering, translation, summarization, image classification, object detection, speech recognition, and fine-tuning models on custom datasets.
umap-learn
UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
uspto-database
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.
vaex
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that don't fit in memory.
zarr-python
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.
zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
Claudeisms Operational Guidelines
Apply strict operational protocols for AI task execution including sequential processing, minimal responses, no destructive operations without confirmation
claudisms
Claude Code plugin enforcing operational guidelines, terse responses, sequential execution, and no destructive operations without confirmation.
cloudbase-document-database-web-sdk
Use CloudBase document database Web SDK to query, create, update, and delete data. Supports complex queries, pagination, aggregation, and geolocation queries.
Cloudflare Manager
Comprehensive Cloudflare account management for deploying Workers, KV Storage, R2, Pages, DNS, and Routes. Use when deploying cloudflare services, managing worker containers, configuring KV/R2 storage, or setting up DNS/routing. Requires CLOUDFLARE_API_KEY in .env and Bun runtime with dependencies installed.
codex-skill
Use when user asks to leverage codex, gpt-5, or gpt-5.1 to implement something (usually implement a plan or feature designed by Claude). Provides non-interactive automation mode for hands-off task execution without approval prompts.
codex
Execute Codex CLI for code analysis, refactoring, and automated code changes. Use when you need to delegate complex code tasks to Codex AI with file references (@syntax) and structured output.
Command Development
This skill should be used when the user asks to "create a slash command", "add a command", "write a custom command", "define command arguments", "use command frontmatter", "organize commands", "create command with file references", "interactive command", "use AskUserQuestion in command", or needs guidance on slash command structure, YAML frontmatter fields, dynamic arguments, bash execution in commands, user interaction patterns, or command development best practices for Claude Code.
Plugin Structure
This skill should be used when the user asks to "create a plugin", "scaffold a plugin", "understand plugin structure", "organize plugin components", "set up plugin.json", "use ${CLAUDE_PLUGIN_ROOT}", "add commands/agents/skills/hooks", "configure auto-discovery", or needs guidance on plugin directory layout, manifest configuration, component organization, file naming conventions, or Claude Code plugin architecture best practices.
compliance-architecture
Enterprise-grade compliance architecture for SOC 2, HIPAA, GDPR, PCI-DSS. Provides compliance checklists, security controls, audit guidance, and regulatory requirements for serverless and cloud architectures. Activates for compliance, HIPAA, SOC2, SOC 2, GDPR, PCI-DSS, PCI DSS, regulatory, healthcare data, payment card, data protection, audit, security standards, regulated industry, BAA, business associate agreement, DPIA, data protection impact assessment.
component-guidelines-docs
Generate comprehensive component guideline documentation for SEED Design System. Use when creating or updating design guideline documentation in ./docs/content/docs/components directory. This skill helps create high-quality documentation similar to action-button.mdx.
compound-docs
Capture solved problems as categorized documentation with YAML frontmatter for fast lookup
condition-based-waiting
Use when tests have race conditions, timing dependencies, or inconsistent pass/fail behavior - replaces arbitrary timeouts with condition polling to wait for actual state changes, eliminating flaky tests from timing guesses
conference-talk-builder
Create conference talk outlines and iA Presenter markdown slides using the Story Circle narrative framework. Use when the user wants to structure a tech talk, create presentation slides, or needs help organizing talk ideas into a story-driven format.
Confidence Check
Pre-implementation confidence assessment (≥90% required). Use before starting any implementation to verify readiness with duplicate check, architecture compliance, official docs verification, OSS references, and root cause identification.
Plugin Settings
This skill should be used when the user asks about "plugin settings", "store plugin configuration", "user-configurable plugin", ".local.md files", "plugin state files", "read YAML frontmatter", "per-project plugin settings", or wants to make plugin behavior configurable. Documents the .claude/plugin-name.local.md pattern for storing plugin-specific configuration with YAML frontmatter and markdown content.
Consciousness Principles
The four Sanskrit principles: Truth-Self, Knowledge-Self, Bliss-Self, Power-Self. Use when need to understand the operational physics of consciousness.
Convex Agents Usage Tracking
Tracks LLM token consumption and usage metrics for billing, monitoring, and optimization. Use this to log token usage, calculate costs, generate invoices, and understand which agents or users consume the most resources.
convex-realtime
Implement real-time features using Convex reactive queries that automatically update when data changes, enabling live collaboration, instant updates, and reactive UIs without manual polling. Use when building live dashboards, implementing collaborative editing, creating chat applications, showing real-time notifications, building activity feeds, implementing presence indicators, creating reactive search, or any feature requiring instant data synchronization across clients.
create-skill-file
Guides Claude in creating well-structured SKILL.md files following best practices. Provides clear guidelines for naming, structure, and content organization to make skills easy to discover and execute.
creating-pr
Use when creating or updating pull requests with comprehensive descriptions and meaningful commits - streamlines PR workflow with branch management and commit best practices
crypto-research
Comprehensive cryptocurrency market research and analysis using specialized AI agents. Analyzes market data, price trends, news sentiment, technical indicators, macro correlations, and investment opportunities. Use when researching cryptocurrencies, analyzing crypto markets, evaluating digital assets, or investigating blockchain projects like Bitcoin, Ethereum, Solana, etc.
data-migration
Plan and execute database migrations, data transformations, and system migrations safely with rollback strategies and data integrity validation. Use when migrating databases, transforming data schemas, moving between database systems, implementing versioned migrations, handling data transformations, ensuring data integrity, or planning zero-downtime migrations.
data-model-creation
Optional advanced tool for complex data modeling. For simple table creation, use relational-database-tool directly with SQL statements.
data-sourcing
Optimize provider selection, routing, and credit usage across 150+ enrichment sources for company/contact intelligence.
data-viz-plots
Create publication-quality plots and visualizations using matplotlib and seaborn. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
Database Implementation
Database schema design, migrations, query optimization with SQL, Exposed ORM, Flyway. Use for database, migration, schema, sql, flyway tags. Provides migration patterns, validation commands, rollback strategies.
database-testing
Database schema validation, data integrity testing, migration testing, transaction isolation, and query performance. Use when testing data persistence, ensuring referential integrity, or validating database migrations.
deal-desk
Use to manage pricing, packaging, and approval workflows for renewal
database-migration
Execute database migrations across ORMs and platforms with zero-downtime strategies, data transformation, and rollback procedures. Use when migrating databases, changing schemas, performing data transformations, or implementing zero-downtime deployment strategies.
agent-rules
Use when creating or updating AGENTS.md files, .github/copilot-instructions.md, or other AI agent rule files, onboarding AI agents to a project, standardizing agent documentation, or when anyone mentions AGENTS.md, agent rules, project onboarding, or codebase documentation for AI agents.
autumn-catalog
Modeling a user's pricing into an Autumn catalog — deciding the structure (plans, variants, add-ons, licenses, credit systems, pooled balances) before writing config, then filling in the numbers. Use when the user describes their pricing or asks to model, change, or push a catalog.
autumn-concepts
Understanding Autumn's billing objects before acting on them — what a plan version is and what active means, when a trial starts or ends billing, how entity- and seat-scoped subscriptions differ from the customer's own, what a customize diff actually changes, and how caps, overage, and top-ups behave. Load before versioning, editing, or drafting a plan, or when a customer's state does not match the plain reading of their plan.
autumn-integrate
Integrating Autumn into an app's backend — creating customers, billing flows (attach, checkout, upgrade, cancel), gating features with check, recording usage with track, and exposing billing data to the frontend. Use when the user asks to integrate Autumn, add billing/payments to their app, gate features, meter usage, or build checkout/upgrade flows. Requires a pushed catalog; use autumn-catalog first if plans don't exist yet.
autumn-setup
First-time Autumn setup — install the atmn CLI, connect to an org (sign in, or keyless with no account), turn the user's pricing into autumn.config.ts, and push it to a sandbox org. Use when the user is new to Autumn, pastes an Autumn setup prompt, or asks to set up Autumn, add billing, monetization, subscriptions, usage-based billing, pricing, or plans. If Autumn is already set up, use autumn-catalog instead.
angular-forms
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angular-performance
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django-drf
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github-pr
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jira-epic
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jira-task
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nextjs-15
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playwright
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