_template_reference_first
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agent-survey-corpus
Download a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning.
anchor-sheet
Extract per-subsection “anchor facts” (NO PROSE) from evidence packs so the writer is forced to include concrete numbers/benchmarks/limitations instead of generic summaries.
draft-polisher
Audit-style editing pass for `output/DRAFT.md`: remove template boilerplate, improve coherence, and enforce citation anchoring.
evaluation-anchor-checker
Audit and rewrite evaluation/numeric claims to ensure they carry minimal protocol context (task + metric + constraint) and avoid underspecified model naming.
evidence-auditor
Use when `paper-review` needs a claim-by-claim evidence gap report grounded in an extracted claim ledger.
latex-scaffold
Scaffold a LaTeX project (`latex/main.tex`, optional bibliography wiring, structure) from an existing Markdown draft.
limitation-weaver
Rewrite limitation passages so the paper keeps limitations without falling into count-based slot phrases (e.g., \\\"Two limitations…\\\") across many H3s.
literature-engineer
Multi-route literature expansion + metadata normalization for evidence-first surveys.
manuscript-ingest
Use when `paper-review` needs a canonical manuscript text artifact before claim extraction.
module-planner
Use when a tutorial concept DAG exists and the run needs an ordered teaching plan with objectives and outputs.
novelty-matrix
Use when `paper-review` needs overlap/delta positioning against provided related work.
opener-variator
Rewrite subsection openers so they stop reading like a generated table-of-contents: remove \\\"overview/narration\\\" stems and reduce repeated opener cadences across H3s.
outline-budgeter
Merge/simplify an over-fragmented outline to hit a paper-like section budget (NO PROSE): target final ToC ~6–8 H2, fewer thicker H3.
outline-builder
Convert a taxonomy (`outline/taxonomy.yml`) into a bullet-only outline (`outline/outline.yml`) with sections/subsections.
outline-refiner
Planner-pass coverage + redundancy report for an outline+mapping, producing `outline/coverage_report.md` and `outline/outline_state.jsonl`.
paper-notes
Write structured notes for each paper in the core set into `papers/paper_notes.jsonl` (summary/method/results/limitations).
paragraph-curator
Deterministically compact final H3 bodies to the active delivery profile's paragraph budget without deleting prose or changing citation-block order.
pdf-text-extractor
Download PDFs (when available) and extract plain text to support full-text evidence, writing `papers/fulltext_index.jsonl` and `papers/fulltext/*.txt`.
pipeline-auditor
Audit/regression checks for the evidence-first survey pipeline: citation health, per-section coverage, placeholder leakage, and template repetition.
pipeline-router
Route an unbound research Goal to one Workflow or materialize its initial C0 kickoff block; use during initial binding, not for later checkpoint summaries or approval.
post-merge-voice-gate
Post-merge paper-voice gate: inspect the reader-facing draft for planner-talk and axis-label artifacts, then route fixes to the actual source.
prose-writer
Write `output/DRAFT.md` (or `output/SNAPSHOT.md`) from an approved outline and evidence packs, using only verified citation keys from `citations/ref.bib`.
protocol-writer
Use when `evidence-review` needs an operational protocol before screening and extraction.
redundancy-pruner
Remove repeated boilerplate across sections (methodology disclaimers, generic transitions, repeated summaries) while preserving citations and meaning.
research-pipeline-runner
Run a research Workflow end to end when the user requests a survey, brief, review, tutorial, or idea exploration; route an unbound goal, execute one eligible Unit at a time, and stop at checkpoints or diagnosed failures.
rubric-writer
Use when `paper-review` has claims plus evidence gaps and needs the final referee-style report.
schema-normalizer
Normalize cross-skill JSONL interfaces (ids + titles + citation key formats) so downstream skills do not rely on best-effort joins.
screening-manager
Use when an approved `evidence-review` protocol needs to be applied to a candidate pool.
section-bindings
Bind papers to chapter-level sections first, writing `outline/section_bindings.jsonl` and `outline/section_binding_report.md`.
section-briefs
Build chapter-level briefs (`outline/section_briefs.jsonl`) from chapter skeleton plus section bindings before stable H3 decomposition.
section-logic-polisher
Logic coherence pass for per-H3 section files: enforce a clear paragraph-1 thesis and surface paragraph-island risks (connector stats are diagnostic, not a quota) before merging.
section-mapper
Map papers from the core set to each outline subsection and write `outline/mapping.tsv` with coverage tracking.
section-merger
Deterministically merge the final fingerprinted section snapshot into `output/DRAFT.md`, preserving outline order and inserting transitions only when explicitly enabled.
snapshot-writer
Use when a `research-brief` workspace has a small paper set plus outline and needs a compact reader-facing briefing instead of a full survey.
style-harmonizer
De-slot and harmonize paper voice across `sections/*.md` without changing meaning or citation keys.
subsection-briefs
Build per-subsection writing briefs (NO PROSE) so later drafting is driven by evidence and checkable comparison axes (not outline placeholders).
subsection-polisher
Polish a single H3 unit file under `sections/` into survey-grade prose (de-template + contrast/eval/limitation), without changing citation keys.
subsection-writer
Write survey prose into per-section files under `sections/` so each unit can be QA'd independently before merging.
survey-seed-harvest
Identify survey/review papers in a retrieved set and extract taxonomy seeds into `outline/taxonomy.yml` (topics/subtopics/terminology).
nsfc-justification-writer
当用户要求写作、重构、审查或润色 NSFC/科研基金申请书的立项依据、研究意义、国内外现状、科学问题或科学假设时使用。以语义论证和可核验性为核心，支持任意文件名、标题命令和 LaTeX 结构；默认全自动完成诊断、成稿、校正、备份和写入，不向用户发起中途确认或审核问题。
research-guide-updater
当用户明确要求"更新项目指南""同步指南""沉淀洞见到指南"，或要求使用旧名 guide-updater skill 时使用。将对话中新产生的可复用写作洞见实时沉淀到项目指南文件，保持术语口径一致、结构稳定、可检验与可复现。调用时必须指定指南文件路径。
research-literature-interpretation
像资深研究者带学生一样解读单篇论文：提炼问题、机制、证据强弱、边界与可迁移启发。用户提供 PDF、arXiv/DOI/出版社链接、本地论文或正文片段并希望理解、批判、复现或学习时使用；不用于论文发现、多论文综述或只改写摘要。
research-plan
科研分析策略规划助手。根据用户的科研分析需求，通过调研顶尖期刊/会议论文的分析方法，制定个性化、可落地的最优分析策略。适用于需要制定实验设计、数据分析流程、技术路线的场景；兼容旧名 make-research-plan 的 prompt 触发。
nsfc-humanization
去除 NSFC 标书中的 AI 机器味，覆盖词语、句法、段落和章节层，尤其处理伪对立、工程协议腔、规格书式字段串、术语漂移、边界声明过重和研究动作不清（不适用：非标书内容/需修改格式/需补充新内容）
nsfc-research-foundation-writer
当用户明确要求"写/改研究基础""研究基础+工作条件+风险应对编排"时使用。为 NSFC 正文"（三）研究基础"写作/重构，并同步编排"工作条件"和"研究风险应对"，用证据链证明项目可行、资源条件对位研究内容、风险预案可执行。
paper-explain-figures
解读论文 Figure 的含义并输出一份“教会人类如何读图”的高可读性 Markdown 报告；支持输入 1 个或多个 figure 文件绝对路径与人工解读，自动尝试从图附近检索生成该图的源代码，并采用类似 parallel-vibe 的方式通过 `codex exec`/`claude -p` 以进程级隔离解读每张图（并发上限默认 3，可在 config.yaml 调整）。⚠️ 不适用：用户只是想改图尺寸/裁剪/改格式；或要求直接修改图片/源代码（本 skill 对图片与源代码全程只读，严禁修改）。
paper-write-sci
根据 LaTeX 论文项目撰写、修订和润色 SCI 期刊论文，默认 AI 自主模式，也支持人机协作仅输出审查计划；提供作者风格化写作、数字事实核验、逻辑树多轮审查与 PDF/Word 渲染闭环。⚠️ 不适用：仅改格式/样式参数、纯参考文献管理、图片处理、非论文写作任务。
nsfc-length-aligner
基于国自然标书篇幅预算标准；检查目标标书篇幅并总结差距；给出针对性优化建议；在尽量不改变原意的前提下扩写/压缩到达标。
research-idea
当用户提供研究资料、项目背景、实验结果、论文草稿、PR/仓库信息或自然语言线索，希望在文献调查基础上提出科学问题、凝练可证伪假设、寻找创新点或判断研究想法价值时使用。⚠️ 不适用：用户只需要完整实验方案/分析计划（优先 research-plan）、只要写文献综述正文（优先 research-literature-review）、或只要不需要文献依据的普通头脑风暴。
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